Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ETF1P3-201ENST00000430422 1160 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.54□□□□□ -2
HLA-DMBP28068 HMGB3P11-201ENST00000440127 604 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC104978.1-201ENST00000449387 391 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 XKRYP5-201ENST00000449659 483 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 HMGB1P5-202ENST00000451497 985 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 RPL21P10-201ENST00000463521 490 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 AC108078.3-201ENST00000502633 489 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 OR5H3P-201ENST00000502817 919 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC2.54□□□□□ -2
HLA-DMBP28068 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC074250.1-201ENST00000511117 192 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 RN7SKP277-201ENST00000516895 283 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 RN7SKP116-201ENST00000516902 319 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.54□□□□□ -2
HLA-DMBP28068 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC2.54□□□□□ -2
HLA-DMBP28068 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.54□□□□□ -2
HLA-DMBP28068 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.54□□□□□ -2
HLA-DMBP28068 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC2.54□□□□□ -2
HLA-DMBP28068 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.54□□□□□ -2
HLA-DMBP28068 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC012468.1-201ENST00000604888 430 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 AL137246.1-201ENST00000607072 977 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 AC090425.2-201ENST00000608818 501 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 AP004607.9-201ENST00000618202 316 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 U6.48-201ENST00000618523 106 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.54□□□□□ -2
HLA-DMBP28068 AC092184.1-201ENST00000625042 715 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 AC127502.3-201ENST00000636170 1206 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.54□□□□□ -2
HLA-DMBP28068 MFSD8-233ENST00000641482 4860 ntBASIC2.54□□□□□ -2
HLA-DMBP28068 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.54□□□□□ -2
HLA-DMBP28068 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
HLA-DMBP28068 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HLA-DMBP28068 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.53□□□□□ -2
HLA-DMBP28068 RPL7P26-201ENST00000333817 754 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.53□□□□□ -2
HLA-DMBP28068 RNA5SP295-201ENST00000362655 121 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC234772.1-201ENST00000377927 937 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.53□□□□□ -2
HLA-DMBP28068 RNU6-564P-201ENST00000410983 104 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 RPL31P2-201ENST00000413849 377 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 EI24P1-201ENST00000416584 867 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 RPL23AP69-201ENST00000431134 458 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 MTCO1P43-201ENST00000431831 488 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AL159987.2-201ENST00000432754 307 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 OR2B8P-201ENST00000432841 938 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 RPS27P5-201ENST00000444247 244 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.53□□□□□ -2
HLA-DMBP28068 AC107398.1-201ENST00000486904 505 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC006483.1-201ENST00000487308 313 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 WBP1LP4-201ENST00000505043 344 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 SNORA64.4-201ENST00000516632 81 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 IGKV2-26-201ENST00000518305 343 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 AC104027.1-201ENST00000521887 300 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 OR4R3P-201ENST00000525084 838 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 MTND2P26-201ENST00000528255 1029 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 AC011611.1-201ENST00000552179 197 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC074029.1-201ENST00000552531 1044 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HLA-DMBP28068 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 AC005951.1-201ENST00000576706 485 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.53□□□□□ -2
HLA-DMBP28068 AC007179.3-201ENST00000604976 235 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
HLA-DMBP28068 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.53□□□□□ -2
HLA-DMBP28068 MIR7975-201ENST00000619350 68 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HLA-DMBP28068 MIR4496-201ENST00000635896 61 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 FAM157B-203ENST00000639350 358 ntBASIC2.53□□□□□ -2
HLA-DMBP28068 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
HLA-DMBP28068 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2.01
HLA-DMBP28068 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 FER-202ENST00000438717 1531 ntTSL 2 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 HSPA8P19-201ENST00000505359 1517 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC017071.1-201ENST00000564407 2204 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 RNU1-70P-201ENST00000362618 164 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 SNORD56.3-201ENST00000363507 71 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 RNU6-761P-201ENST00000384148 107 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 MIR490-201ENST00000384865 128 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms