Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL670379.4-201ENST00000605279 254 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.12-201ENST00000605291 253 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.8-201ENST00000605353 252 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.9-201ENST00000605428 253 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL670379.7-201ENST00000605823 252 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC2.89□□□□□ -1.95
COL6A3P12111 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 HMGB3P18-201ENST00000406327 590 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 POLR2J4-204ENST00000418424 324 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.89□□□□□ -1.95
COL6A3P12111 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.89□□□□□ -1.95
COL6A3P12111 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.89□□□□□ -1.95
COL6A3P12111 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC2.89□□□□□ -1.95
COL6A3P12111 AC009318.2-201ENST00000610917 651 ntBASIC2.89□□□□□ -1.95
COL6A3P12111 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL6A3P12111 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC2.88□□□□□ -1.95
COL6A3P12111 SNORA70E-201ENST00000384492 135 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.88□□□□□ -1.95
COL6A3P12111 CEACAMP4-201ENST00000457676 421 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 RN7SKP96-201ENST00000516948 297 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 RN7SKP234-201ENST00000517173 224 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.88□□□□□ -1.95
COL6A3P12111 AC244517.3-201ENST00000616254 1235 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC2.88□□□□□ -1.95
COL6A3P12111 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL6A3P12111 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC2.88□□□□□ -1.95
COL6A3P12111 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC2.88□□□□□ -1.95
COL6A3P12111 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL6A3P12111 AC022795.1-201ENST00000473808 480 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.88□□□□□ -1.95
COL6A3P12111 TCP11X3P-202ENST00000514289 1254 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 MAPK10-322ENST00000641485 4530 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
COL6A3P12111 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL6A3P12111 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL6A3P12111 AC097634.1-201ENST00000604491 2467 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
COL6A3P12111 SNORD114-26-201ENST00000363543 72 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC2.88□□□□□ -1.95
COL6A3P12111 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.88□□□□□ -1.95
COL6A3P12111 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.88□□□□□ -1.95
COL6A3P12111 AC107934.2-201ENST00000518653 310 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 AP003385.6-201ENST00000531603 374 ntBASIC2.88□□□□□ -1.95
COL6A3P12111 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL6A3P12111 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
COL6A3P12111 MTND5P24-201ENST00000438892 1767 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 RN7SKP44-201ENST00000363602 316 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 MTND2P25-201ENST00000449028 610 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 RN7SL330P-201ENST00000469709 307 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 AC006445.2-201ENST00000510061 472 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 RNU1-143P-201ENST00000516296 146 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 AC243972.3-201ENST00000539655 198 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.87□□□□□ -1.95
COL6A3P12111 U1.23-201ENST00000610293 146 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 RNU1-68P-201ENST00000615382 146 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 AL136981.2-201ENST00000617319 734 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 AL669942.2-201ENST00000620352 697 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 U1.39-201ENST00000621562 146 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL6A3P12111 MAPK10-286ENST00000641208 8747 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC2.87□□□□□ -1.95
COL6A3P12111 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 ELOCP13-201ENST00000443934 329 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC2.87□□□□□ -1.95
COL6A3P12111 AC008716.1-201ENST00000511084 513 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 RANP3-201ENST00000530970 276 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.87□□□□□ -1.95
COL6A3P12111 AC015813.4-201ENST00000610469 179 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 YWHAEP7-203ENST00000622054 312 ntBASIC2.87□□□□□ -1.95
COL6A3P12111 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
COL6A3P12111 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
COL6A3P12111 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL6A3P12111 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC2.86□□□□□ -1.95
COL6A3P12111 AC004520.1-201ENST00000608362 1413 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 USP9YP6-201ENST00000413550 854 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 RPS12P2-201ENST00000439728 269 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 USP9YP34-201ENST00000453983 808 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC2.86□□□□□ -1.95
COL6A3P12111 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.86□□□□□ -1.95
COL6A3P12111 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC2.86□□□□□ -1.95
COL6A3P12111 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC2.86□□□□□ -1.95
COL6A3P12111 AC022069.1-201ENST00000582910 658 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.86□□□□□ -1.95
COL6A3P12111 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.86□□□□□ -1.95
COL6A3P12111 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC2.86□□□□□ -1.95
COL6A3P12111 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms