Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SDC3O75056 RNU6-416P-201ENST00000516265 103 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 AC087894.1-201ENST00000538359 518 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC3O75056 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC3O75056 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC3O75056 AC010735.1-201ENST00000567305 1026 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC006270.2-201ENST00000578523 652 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC005412.1-201ENST00000580812 1049 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.67□□□□□ -1.82
SDC3O75056 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.67□□□□□ -1.82
SDC3O75056 AC068620.3-201ENST00000602749 560 ntBASIC3.67□□□□□ -1.82
SDC3O75056 HMGN2P28-201ENST00000606102 262 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC013468.1-201ENST00000608680 598 ntBASIC3.67□□□□□ -1.82
SDC3O75056 MIR486-1-201ENST00000612171 68 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC079684.1-201ENST00000621405 437 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC010872.1-201ENST00000624225 675 ntBASIC3.67□□□□□ -1.82
SDC3O75056 AC068620.4-201ENST00000636730 1182 ntBASIC3.67□□□□□ -1.82
SDC3O75056 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
SDC3O75056 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.67□□□□□ -1.82
SDC3O75056 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.67□□□□□ -1.82
SDC3O75056 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SDC3O75056 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.67□□□□□ -1.82
SDC3O75056 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC3O75056 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC3O75056 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 RNU5B-1-201ENST00000363286 116 ntBASIC3.66□□□□□ -1.82
SDC3O75056 RNU5B-4P-201ENST00000363508 111 ntBASIC3.66□□□□□ -1.82
SDC3O75056 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 MIR1250-201ENST00000408098 113 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AC069282.1-201ENST00000411911 526 ntBASIC3.66□□□□□ -1.82
SDC3O75056 KRR1P1-201ENST00000419430 803 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 AC005517.2-201ENST00000424673 553 ntBASIC3.66□□□□□ -1.82
SDC3O75056 USP12PY-201ENST00000427677 1064 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AL159987.2-201ENST00000432754 307 ntBASIC3.66□□□□□ -1.82
SDC3O75056 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 SNORA71B-202ENST00000439232 272 ntBASIC3.66□□□□□ -1.82
SDC3O75056 ARF4P4-201ENST00000439608 520 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 TPTE2P3-201ENST00000441562 1189 ntBASIC3.66□□□□□ -1.82
SDC3O75056 RPS26P56-201ENST00000444468 240 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC3O75056 RNU7-140P-201ENST00000459546 60 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 AP000893.1-201ENST00000474462 794 ntBASIC3.66□□□□□ -1.82
SDC3O75056 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 AC069499.1-201ENST00000489433 509 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC3O75056 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.66□□□□□ -1.82
SDC3O75056 RNU2-58P-201ENST00000516403 183 ntBASIC3.66□□□□□ -1.82
SDC3O75056 RNA5SP309-201ENST00000516670 106 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.66□□□□□ -1.82
SDC3O75056 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 HIGD1AP6-201ENST00000521833 279 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.66□□□□□ -1.82
SDC3O75056 AC008507.2-201ENST00000588402 1176 ntBASIC3.66□□□□□ -1.82
SDC3O75056 BNIP3P31-201ENST00000604515 566 ntBASIC3.66□□□□□ -1.82
SDC3O75056 SNORA62.6-201ENST00000606322 83 ntBASIC3.66□□□□□ -1.82
SDC3O75056 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 U73479.1-201ENST00000618062 168 ntBASIC3.66□□□□□ -1.82
SDC3O75056 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 AL121594.5-201ENST00000631724 573 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AL590396.4-201ENST00000636779 956 ntBASIC3.66□□□□□ -1.82
SDC3O75056 AL392088.2-201ENST00000637607 285 ntBASIC3.66□□□□□ -1.82
SDC3O75056 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.66□□□□□ -1.82
SDC3O75056 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.66□□□□□ -1.82
SDC3O75056 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SDC3O75056 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.66□□□□□ -1.82
SDC3O75056 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.65□□□□□ -1.82
SDC3O75056 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SDC3O75056 RNU6-353P-201ENST00000364266 108 ntBASIC3.65□□□□□ -1.83
SDC3O75056 MIR490-201ENST00000384865 128 ntBASIC3.65□□□□□ -1.83
SDC3O75056 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.65□□□□□ -1.83
SDC3O75056 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.65□□□□□ -1.83
SDC3O75056 AP000907.1-201ENST00000428428 510 ntBASIC3.65□□□□□ -1.83
SDC3O75056 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms