Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 AC025594.3-201ENST00000613068 790 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC018926.3-201ENST00000618841 406 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.81□□□□□ -1.8
LMX1BO60663 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.81□□□□□ -1.8
LMX1BO60663 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
LMX1BO60663 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.81□□□□□ -1.8
LMX1BO60663 CASC19-284ENST00000642142 1868 ntBASIC3.81□□□□□ -1.8
LMX1BO60663 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
LMX1BO60663 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.81□□□□□ -1.8
LMX1BO60663 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LMX1BO60663 MAPK10-304ENST00000641341 3984 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LMX1BO60663 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
LMX1BO60663 ST7-212ENST00000422922 1887 ntTSL 5 BASIC3.8□□□□□ -1.8
LMX1BO60663 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.8□□□□□ -1.8
LMX1BO60663 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 RNU1-108P-201ENST00000362556 161 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 RNU6-582P-201ENST00000362989 107 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 RNU1-130P-201ENST00000363930 160 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 SNORD66.1-201ENST00000391230 76 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 AC025750.1-201ENST00000399891 379 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC097374.1-203ENST00000400783 485 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 ELOCP17-201ENST00000414751 326 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 UBTFL3-201ENST00000418934 1024 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.8□□□□□ -1.8
LMX1BO60663 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 ACTR3P2-201ENST00000439585 1257 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC093899.1-201ENST00000457984 376 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 RPL7AP52-201ENST00000458096 790 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 SRRM1P2-201ENST00000464531 1192 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 RPL7P22-201ENST00000466005 733 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 RPL35AP15-201ENST00000468042 339 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 UBTFL6-201ENST00000477929 1024 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 RPL7P38-201ENST00000488396 739 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 AC011352.3-201ENST00000505162 593 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC109927.2-201ENST00000506416 303 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 ATP1B1P1-201ENST00000509767 915 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC048346.1-201ENST00000510247 144 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 MRPL49P2-201ENST00000521066 465 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.8□□□□□ -1.8
LMX1BO60663 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.8□□□□□ -1.8
LMX1BO60663 MTATP6P3-201ENST00000581686 676 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.8□□□□□ -1.8
LMX1BO60663 VN1R92P-201ENST00000598511 928 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AL390838.2-201ENST00000602394 274 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC079089.3-201ENST00000603094 673 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 MTCYBP22-201ENST00000603788 447 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC128687.1-201ENST00000605304 619 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC087752.4-201ENST00000605911 462 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AL031666.3-201ENST00000609320 1006 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC106028.5-201ENST00000610332 395 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 AC010678.1-201ENST00000614118 713 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 MIR7844-201ENST00000616161 122 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.8□□□□□ -1.8
LMX1BO60663 AP000843.1-201ENST00000624880 701 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 ASNSP1-204ENST00000641977 1664 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 OR51H2P-202ENST00000641424 3046 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LMX1BO60663 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 AL450326.2-201ENST00000421913 1962 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 VPS35P1-201ENST00000563400 1518 ntBASIC3.8□□□□□ -1.8
LMX1BO60663 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LMX1BO60663 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
LMX1BO60663 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms