Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
TRIM39Q9HCM9 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.59
TRIM39Q9HCM9 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC024560.2-201ENST00000507981 1497 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 U8.4-201ENST00000363626 134 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 RNU6-359P-201ENST00000365466 108 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 U3.20-201ENST00000390909 217 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 SNORA68.2-201ENST00000391263 128 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 MIR1277-201ENST00000408536 78 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 RNA5SP296-201ENST00000410523 111 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 RNU6-195P-201ENST00000411352 109 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC127391.1-201ENST00000411737 98 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 OR51AB1P-201ENST00000429046 620 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC133104.1-201ENST00000429100 218 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC114495.1-201ENST00000441274 436 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 WASF1P1-201ENST00000447560 1131 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 HMGB3P21-201ENST00000452483 547 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 FABP3P2-201ENST00000453169 399 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 C1DP4-201ENST00000455429 424 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AL359385.1-201ENST00000456509 365 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 RPS20P24-201ENST00000457473 361 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AL121769.1-201ENST00000469473 401 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC021382.1-201ENST00000483523 359 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 RN7SL814P-201ENST00000487715 300 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC007182.2-201ENST00000489251 402 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC116353.2-201ENST00000505332 712 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC093824.1-201ENST00000508796 343 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 Vault.3-201ENST00000516676 95 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AP003181.2-201ENST00000528941 181 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC009101.1-201ENST00000568135 242 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC006504.3-201ENST00000586818 523 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC011447.4-201ENST00000587562 111 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC067959.1-201ENST00000604334 379 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 MEMO1P5-201ENST00000604810 406 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC011816.2-201ENST00000607089 556 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AL355073.2-201ENST00000612106 557 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AL133173.2-201ENST00000614270 90 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 AC118658.2-201ENST00000618697 459 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 MIR6839-201ENST00000620425 113 ntBASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.14□□□□□ -1.59
TRIM39Q9HCM9 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 Y_RNA.450-201ENST00000384198 113 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 MIR765-201ENST00000390226 114 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 RPL23AP32-201ENST00000395315 459 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 MTND4LP20-201ENST00000402379 270 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 RN7SKP235-201ENST00000410662 305 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 DPPA2P3-201ENST00000411853 655 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC004987.3-201ENST00000413879 771 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 RPL36AP36-201ENST00000418616 301 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 MTCYBP45-201ENST00000435243 565 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms