Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 METTL15P1-201ENST00000481421 1045 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC005351.1-201ENST00000511152 786 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AL035413.2-201ENST00000604801 525 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 MIR7153-201ENST00000637758 57 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AL049780.3-201ENST00000624612 1583 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC107021.2-201ENST00000567714 2095 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 ASNSP1-201ENST00000518311 1939 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 RNA5SP289-201ENST00000362332 137 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC073508.1-201ENST00000428866 656 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 RPL23AP22-201ENST00000437556 453 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC016696.1-201ENST00000446949 318 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 HMGB3P8-201ENST00000449709 577 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 snoU13.26-201ENST00000459452 105 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 MIR2276-201ENST00000516886 89 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AP000916.1-201ENST00000533869 835 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 RFPL1S-203ENST00000539579 330 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 VN1R78P-201ENST00000597393 564 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC022960.2-201ENST00000616300 666 ntBASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC88AQ3V6T2 AC046144.1-201ENST00000478559 1853 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 RNU1-87P-201ENST00000363727 170 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 DUTP6-201ENST00000425573 462 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 AL450263.2-201ENST00000439400 589 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 EEF1B2P7-201ENST00000451177 676 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 ELOCP23-201ENST00000452014 332 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 snoU13.15-201ENST00000459407 104 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 AL356490.1-201ENST00000623079 479 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 AC091903.1-201ENST00000624322 454 ntBASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC88AQ3V6T2 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 SNORD56.3-201ENST00000363507 71 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 MIR9-1-201ENST00000385198 89 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AL583834.1-201ENST00000406943 343 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AL353692.2-201ENST00000407054 335 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC104058.1-201ENST00000448028 297 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC016542.2-201ENST00000624201 619 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AP002967.1-201ENST00000624203 539 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 RPL7P8-201ENST00000411964 730 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC069540.1-201ENST00000446320 988 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC017037.2-201ENST00000513850 890 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 RNU4-29P-201ENST00000515943 174 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 SNORA64.4-201ENST00000516632 81 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC009977.1-201ENST00000586015 570 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 PLCE1P1-201ENST00000622094 305 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 AC004972.1-201ENST00000623934 2209 ntBASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC88AQ3V6T2 MTND5P24-201ENST00000438892 1767 ntBASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 RNU1-75P-201ENST00000347264 129 ntBASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 AL645937.1-202ENST00000421799 937 ntBASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 AC007563.3-201ENST00000433233 371 ntBASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 AC239798.3-201ENST00000454459 408 ntBASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 OR5G4P-201ENST00000525251 760 ntBASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 AL450326.2-201ENST00000421913 1962 ntBASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
CCDC88AQ3V6T2 RNU1-112P-201ENST00000364401 164 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 IPMKP1-201ENST00000425988 855 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 EXTL2P1-201ENST00000446218 416 ntBASIC3.6□□□□□ -1.83
CCDC88AQ3V6T2 NIPA2P5-201ENST00000452282 464 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms