Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.44□□□□□ -1.86
SHMT2P34897 AC092608.3-201ENST00000625017 386 ntBASIC3.44□□□□□ -1.86
SHMT2P34897 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.44□□□□□ -1.86
SHMT2P34897 AC244258.1-201ENST00000637553 1071 ntBASIC3.44□□□□□ -1.86
SHMT2P34897 AC132825.7-201ENST00000638744 335 ntBASIC3.44□□□□□ -1.86
SHMT2P34897 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.44□□□□□ -1.86
SHMT2P34897 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
SHMT2P34897 AC007656.2-201ENST00000624902 4547 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 MFSD8-233ENST00000641482 4860 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
SHMT2P34897 AP001148.1-201ENST00000624124 2359 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 MIR30E-201ENST00000362104 92 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 RNU6-1339P-201ENST00000363574 91 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 RNA5SP42-201ENST00000364278 115 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SHMT2P34897 MIR124-3-201ENST00000384866 87 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 MIR670-201ENST00000390142 98 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.43□□□□□ -1.86
SHMT2P34897 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.43□□□□□ -1.86
SHMT2P34897 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.43□□□□□ -1.86
SHMT2P34897 PRELID3BP11-201ENST00000414230 479 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.43□□□□□ -1.86
SHMT2P34897 RPS12P23-201ENST00000419579 400 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.43□□□□□ -1.86
SHMT2P34897 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.43□□□□□ -1.86
SHMT2P34897 AL158071.1-201ENST00000430315 461 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.43□□□□□ -1.86
SHMT2P34897 HMGB1P48-201ENST00000446155 598 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AC010468.1-201ENST00000461022 817 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 RN7SL594P-201ENST00000470590 287 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AC112518.2-201ENST00000508565 425 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 SNORA70.18-201ENST00000516696 98 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 RN7SKP82-201ENST00000516786 223 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 RNU6-467P-201ENST00000517027 110 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 OR5B10P-201ENST00000532869 642 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AP003717.3-201ENST00000544832 1180 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.43□□□□□ -1.86
SHMT2P34897 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.43□□□□□ -1.86
SHMT2P34897 MIR4444-1-201ENST00000581696 74 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AP001180.3-201ENST00000582221 145 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 MIR4444-2-201ENST00000584390 74 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 RN7SL622P-201ENST00000585292 275 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.43□□□□□ -1.86
SHMT2P34897 MIR6075-201ENST00000620782 95 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
SHMT2P34897 AL590396.2-201ENST00000636511 1041 ntBASIC3.43□□□□□ -1.86
SHMT2P34897 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SHMT2P34897 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
SHMT2P34897 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SHMT2P34897 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.43□□□□□ -1.86
SHMT2P34897 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.42□□□□□ -1.86
SHMT2P34897 NMD3P1-201ENST00000439704 1488 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
SHMT2P34897 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
SHMT2P34897 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.42□□□□□ -1.86
SHMT2P34897 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SHMT2P34897 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SHMT2P34897 AC234772.1-201ENST00000377927 937 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 OR52E6-202ENST00000379946 954 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
SHMT2P34897 PRRC2CP1-201ENST00000404428 159 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 SNORA11C-201ENST00000408532 129 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 RNU2-21P-201ENST00000410368 188 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 RN7SKP53-201ENST00000411337 315 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 RPL31P12-201ENST00000422587 358 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 MTCO2P1-201ENST00000424648 477 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.42□□□□□ -1.86
SHMT2P34897 BX679664.1-201ENST00000434429 253 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SHMT2P34897 MOB1AP2-201ENST00000446060 614 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.42□□□□□ -1.86
SHMT2P34897 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.42□□□□□ -1.86
SHMT2P34897 AC010401.1-201ENST00000463867 348 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 RPL37P6-202ENST00000464216 403 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.42□□□□□ -1.86
SHMT2P34897 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.42□□□□□ -1.86
SHMT2P34897 OR4R2P-201ENST00000530815 597 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 TGIF1P1-201ENST00000558095 802 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 MIR5047-201ENST00000579212 100 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
SHMT2P34897 AC026741.1-201ENST00000605892 482 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 AL158211.2-201ENST00000607282 395 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 MIR92B-201ENST00000607575 96 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 MIR6864-201ENST00000617935 70 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 AL357559.1-201ENST00000622228 274 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 AC017104.5-201ENST00000637647 639 ntBASIC3.42□□□□□ -1.86
SHMT2P34897 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SHMT2P34897 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.42□□□□□ -1.86
SHMT2P34897 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.42□□□□□ -1.86
SHMT2P34897 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.42□□□□□ -1.86
SHMT2P34897 AC046144.1-201ENST00000478559 1853 ntBASIC3.41□□□□□ -1.86
SHMT2P34897 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SHMT2P34897 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SHMT2P34897 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SHMT2P34897 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SHMT2P34897 AL512646.1-201ENST00000269395 1077 ntBASIC3.41□□□□□ -1.86
SHMT2P34897 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
SHMT2P34897 RNA5SP119-201ENST00000362715 117 ntBASIC3.41□□□□□ -1.86
SHMT2P34897 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.41□□□□□ -1.86
SHMT2P34897 RNA5SP235-201ENST00000365411 114 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms