Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 RPL17P50-201ENST00000396131 546 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 RNU2-6P-201ENST00000411404 190 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC092745.2-202ENST00000411880 369 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 FTH1P6-201ENST00000430768 320 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC023347.2-201ENST00000433994 462 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 HMGB1P45-201ENST00000435986 653 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 RPS4XP4-201ENST00000443195 763 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 MTCYBP42-201ENST00000444653 1130 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC004022.1-201ENST00000447766 1066 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 HMGB3P8-201ENST00000449709 577 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 DNAJC19P8-201ENST00000452887 259 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD4P09016 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 RN7SL93P-201ENST00000463035 293 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD4P09016 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD4P09016 AL139099.1-201ENST00000497398 403 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 HMGB1P21-201ENST00000502313 581 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 BTF3L4P4-201ENST00000506381 449 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 AC021146.1-201ENST00000511202 716 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 RN7SKP82-201ENST00000516786 223 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXD4P09016 AC008562.1-201ENST00000521763 330 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 COX6B1P6-201ENST00000522347 255 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 MTND2P38-201ENST00000522536 667 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 DEFB130C-202ENST00000530001 230 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD4P09016 AC023538.1-201ENST00000534576 736 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD4P09016 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXD4P09016 AC009712.1-201ENST00000564938 316 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 MIR3186-201ENST00000577404 85 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD4P09016 MTND3P19-201ENST00000603825 345 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 SNORA51-201ENST00000606420 132 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 AC004908.3-201ENST00000610248 625 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC009237.15-201ENST00000610252 501 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC243756.2-201ENST00000618406 463 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AL354798.1-201ENST00000622505 329 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 AC019226.2-201ENST00000625973 424 ntBASIC3.62□□□□□ -1.83
HOXD4P09016 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.62□□□□□ -1.83
HOXD4P09016 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD4P09016 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXD4P09016 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 NCAPGP1-201ENST00000505112 1814 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 RNU1-18P-201ENST00000363062 164 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 RNU6-213P-201ENST00000384051 104 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 RNU6-761P-201ENST00000384148 107 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 RNU6-549P-201ENST00000384433 107 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 RNU6-636P-201ENST00000384598 107 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 MIR7-3-201ENST00000384898 110 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 MIR1303-201ENST00000408625 86 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 RNU2-65P-201ENST00000410162 185 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 RNU4-6P-201ENST00000410804 122 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 RPL22P18-201ENST00000417197 377 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC027644.1-201ENST00000419595 298 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 MTCO2P21-201ENST00000419780 677 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AL513175.2-201ENST00000422071 443 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 RAC1P8-201ENST00000427086 527 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 HIGD1AP12-201ENST00000427832 281 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 IFNNP1-201ENST00000429219 553 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 NANOGP2-201ENST00000435391 727 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 AL929288.2-201ENST00000446368 407 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AL589880.1-201ENST00000448271 287 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 AP000926.1-201ENST00000479573 241 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC104108.1-201ENST00000509930 412 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 NDUFB4P9-201ENST00000511646 388 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC010342.1-201ENST00000514047 877 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 IGKV2-23-201ENST00000518729 323 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 TRMT10BP1-201ENST00000519377 943 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms