Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC243756.2-201ENST00000618406 463 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC092650.2-201ENST00000619984 902 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC015726.3-201ENST00000624501 418 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 CDRT1-208ENST00000630868 794 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC026634.1-201ENST00000634369 198 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC068137.3-201ENST00000639191 341 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC073869.6-201ENST00000640656 341 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
DKK3Q9UBP4 AC096656.1-201ENST00000623826 1364 ntBASIC4.76□□□□□ -1.65
DKK3Q9UBP4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 SNORA70F-201ENST00000384142 135 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 Y_RNA.516-201ENST00000384541 124 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 RNU1-82P-201ENST00000390851 165 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 RNU6ATAC25P-201ENST00000408798 117 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AL160275.2-201ENST00000412010 394 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 RPS7P13-201ENST00000413955 498 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC119751.6-201ENST00000416712 186 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 UBTFL3-201ENST00000418934 1024 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC140479.3-201ENST00000418944 1126 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC062016.2-201ENST00000420950 676 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC068287.1-201ENST00000430283 295 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC108463.1-201ENST00000450258 347 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 SSXP1-201ENST00000453640 473 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC079168.2-201ENST00000453977 416 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 RPL23AP2-201ENST00000471227 466 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 UBTFL6-201ENST00000477929 1024 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC090013.1-201ENST00000485147 480 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC011352.3-201ENST00000505162 593 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 ARL2BPP4-201ENST00000506854 471 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 RNA5SP249-201ENST00000516127 99 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 FKBP1BP1-201ENST00000553366 325 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC105129.1-201ENST00000560250 297 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 BNIP3P5-201ENST00000562290 498 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AL512347.1-201ENST00000566420 503 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC138915.2-201ENST00000569776 97 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 CYCSP40-201ENST00000575927 294 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 ABBA01006766.1-201ENST00000584728 294 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC069304.2-201ENST00000605154 435 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC010857.1-201ENST00000606398 594 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 U6atac.1-201ENST00000616025 117 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC015914.2-201ENST00000618167 288 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 RMST_9.1-201ENST00000619945 193 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC018816.2-201ENST00000621460 353 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AL160394.1-201ENST00000624765 724 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AC022031.1-201ENST00000585985 2593 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 AL031119.1-201ENST00000404707 1879 ntBASIC4.75□□□□□ -1.65
DKK3Q9UBP4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
DKK3Q9UBP4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
DKK3Q9UBP4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
DKK3Q9UBP4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
DKK3Q9UBP4 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.74□□□□□ -1.65
DKK3Q9UBP4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
DKK3Q9UBP4 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
DKK3Q9UBP4 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms