Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC068538.1-201ENST00000376856 336 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 RNU6-952P-201ENST00000391164 108 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 MIR320C1-201ENST00000408566 88 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 RN7SKP33-201ENST00000410942 340 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 RPEP3-201ENST00000425462 676 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC104651.1-201ENST00000427559 735 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 GDI2P2-201ENST00000445131 608 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 GEMIN8P3-201ENST00000445417 720 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 RPL7L1P1-201ENST00000448259 785 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 RPL7P31-201ENST00000450192 724 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 APOOP2-201ENST00000461561 539 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 PPIAP21-201ENST00000464473 501 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC090142.1-201ENST00000465776 462 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 FAM172BP-201ENST00000487497 1089 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC108941.1-201ENST00000502853 530 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC109464.2-201ENST00000510242 943 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC105129.1-201ENST00000560250 297 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 MIR544B-201ENST00000582372 78 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC013476.2-201ENST00000614456 459 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC025588.4-201ENST00000615802 908 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 CRYM-AS1-204ENST00000637983 556 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AC108751.5-201ENST00000492880 1336 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 AL022578.1-201ENST00000439330 1433 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.88□□□□□ -1.63
TDP1Q9NUW8 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
TDP1Q9NUW8 OR56B2P-202ENST00000641377 2453 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RPL23AP57-201ENST00000332361 466 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 Y_RNA.6-201ENST00000362350 114 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 SNORA70.2-201ENST00000364506 135 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RNU6-1042P-201ENST00000384204 107 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RNU6-1226P-201ENST00000384317 107 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AL590762.2-201ENST00000395798 571 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 Z98745.1-201ENST00000402553 494 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RN7SKP266-201ENST00000410232 287 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RNU2-21P-201ENST00000410368 188 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC069218.2-201ENST00000411665 344 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 HMGN1P14-201ENST00000412459 517 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 OR8G2P-201ENST00000412796 908 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 TPMTP2-201ENST00000414372 726 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RAD23BP2-201ENST00000416003 1207 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RPL35AP21-201ENST00000437667 333 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 MTND5P14-201ENST00000441481 1267 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 PDSS1P2-201ENST00000449397 678 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC093899.1-201ENST00000457984 376 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC245028.2-201ENST00000458673 253 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 SNORD42A-201ENST00000459584 64 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 FTH1P2-201ENST00000466086 412 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RPL9P33-201ENST00000484311 566 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC106872.3-201ENST00000495104 446 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AP001781.1-201ENST00000530977 207 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.87□□□□□ -1.63
TDP1Q9NUW8 PARP1P2-201ENST00000556806 195 ntBASIC4.87□□□□□ -1.63
TDP1Q9NUW8 AC084783.1-201ENST00000565846 910 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms