Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MAPK10-263ENST00000641052 4307 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
HOXD3P31249 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD3P31249 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.86□□□□□ -1.79
HOXD3P31249 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 NEAT1-202ENST00000501122 22743 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 RNU6-533P-201ENST00000384144 107 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 Y_RNA.582-201ENST00000391023 95 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 COX6CP17-201ENST00000421389 185 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 DNAJC19P7-201ENST00000428811 344 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 AL596276.1-201ENST00000434465 418 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 DNAJC19P4-201ENST00000440115 345 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC011753.3-201ENST00000443436 406 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 BX322784.1-201ENST00000455793 1077 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC026410.2-201ENST00000460281 156 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 RPL31P50-201ENST00000471002 296 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 RN7SL346P-201ENST00000491561 294 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 RN7SL441P-201ENST00000492388 296 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC023424.2-201ENST00000493479 777 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC034159.1-201ENST00000513885 583 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 RNU6-506P-201ENST00000516553 94 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC012339.2-201ENST00000523996 453 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD3P31249 NELL2-211ENST00000548826 559 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXD3P31249 HSPE1P3-201ENST00000559254 309 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 UBE2FP2-201ENST00000566646 462 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 HNRNPCP4-201ENST00000571636 900 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 MIR3667-201ENST00000581025 74 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 OR4G1P-201ENST00000588632 938 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC234771.5-201ENST00000600161 514 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 AC018695.5-201ENST00000605872 315 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AP002360.4-201ENST00000606980 481 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 AC131902.3-201ENST00000611767 581 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 MIR7641-1-201ENST00000627518 61 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 AC006378.2-201ENST00000623178 2476 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD3P31249 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
HOXD3P31249 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HOXD3P31249 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 AC104260.2-201ENST00000623551 3497 ntBASIC3.85□□□□□ -1.79
HOXD3P31249 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD3P31249 LINC01355-201ENST00000566551 5444 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXD3P31249 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXD3P31249 LINC00561-201ENST00000565815 2738 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
HOXD3P31249 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD3P31249 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD3P31249 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXD3P31249 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.84□□□□□ -1.79
HOXD3P31249 RNA5SP191-201ENST00000362585 102 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 RNU6-343P-201ENST00000364709 104 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 RPS3AP36-201ENST00000398190 775 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 HMGB1P17-201ENST00000403495 628 ntBASIC3.84□□□□□ -1.79
HOXD3P31249 RPS4XP9-201ENST00000405151 780 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms