Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 FTO-215ENST00000636491 1676 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX1P28360 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
MSX1P28360 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX1P28360 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.88□□□□□ -1.47
MSX1P28360 AC009779.8-201ENST00000641684 4384 ntBASIC5.88□□□□□ -1.47
MSX1P28360 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
MSX1P28360 TNPO1P2-201ENST00000426249 2665 ntBASIC5.87□□□□□ -1.47
MSX1P28360 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX1P28360 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
MSX1P28360 Y_RNA.60-201ENST00000362831 98 ntBASIC5.87□□□□□ -1.47
MSX1P28360 RNA5SP435-201ENST00000364044 108 ntBASIC5.87□□□□□ -1.47
MSX1P28360 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 U3.25-201ENST00000391209 220 ntBASIC5.87□□□□□ -1.47
MSX1P28360 RPL21P1-201ENST00000399532 476 ntBASIC5.87□□□□□ -1.47
MSX1P28360 MIR1252-201ENST00000408861 65 ntBASIC5.87□□□□□ -1.47
MSX1P28360 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX1P28360 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX1P28360 AC115283.1-201ENST00000427353 400 ntBASIC5.87□□□□□ -1.47
MSX1P28360 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 AL451136.1-201ENST00000435399 325 ntBASIC5.87□□□□□ -1.47
MSX1P28360 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX1P28360 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX1P28360 SNX18P26-201ENST00000458433 740 ntBASIC5.87□□□□□ -1.47
MSX1P28360 AC104472.2-201ENST00000469035 601 ntBASIC5.87□□□□□ -1.47
MSX1P28360 AC087879.1-201ENST00000474343 374 ntBASIC5.87□□□□□ -1.47
MSX1P28360 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.87□□□□□ -1.47
MSX1P28360 AC090686.1-201ENST00000481577 749 ntBASIC5.87□□□□□ -1.47
MSX1P28360 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX1P28360 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX1P28360 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.87□□□□□ -1.47
MSX1P28360 HSBP1P1-201ENST00000555205 166 ntBASIC5.87□□□□□ -1.47
MSX1P28360 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 AC106782.4-201ENST00000568264 210 ntBASIC5.87□□□□□ -1.47
MSX1P28360 MIR4502-201ENST00000580432 81 ntBASIC5.87□□□□□ -1.47
MSX1P28360 MIR4433B-201ENST00000581329 102 ntBASIC5.87□□□□□ -1.47
MSX1P28360 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX1P28360 AC091193.1-201ENST00000604640 448 ntBASIC5.87□□□□□ -1.47
MSX1P28360 IGHV3-29-201ENST00000604817 344 ntBASIC5.87□□□□□ -1.47
MSX1P28360 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.87□□□□□ -1.47
MSX1P28360 AL355816.1-201ENST00000607951 118 ntBASIC5.87□□□□□ -1.47
MSX1P28360 AC069234.4-201ENST00000621276 412 ntBASIC5.87□□□□□ -1.47
MSX1P28360 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX1P28360 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX1P28360 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX1P28360 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX1P28360 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX1P28360 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.87□□□□□ -1.47
MSX1P28360 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.86□□□□□ -1.47
MSX1P28360 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX1P28360 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
MSX1P28360 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 RNU6-188P-201ENST00000364207 107 ntBASIC5.86□□□□□ -1.47
MSX1P28360 SNORA20.1-201ENST00000364790 130 ntBASIC5.86□□□□□ -1.47
MSX1P28360 MIR188-201ENST00000385034 86 ntBASIC5.86□□□□□ -1.47
MSX1P28360 MIR1302-6-201ENST00000408466 90 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.86□□□□□ -1.47
MSX1P28360 RPL30P2-201ENST00000414021 291 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms