Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC104687.1-201ENST00000485829 412 ntBASIC3.79□□□□□ -1.8
COL18A1P39060 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.79□□□□□ -1.8
COL18A1P39060 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.79□□□□□ -1.8
COL18A1P39060 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
COL18A1P39060 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.78□□□□□ -1.8
COL18A1P39060 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
COL18A1P39060 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL18A1P39060 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
COL18A1P39060 AC009963.1-201ENST00000417265 157 ntBASIC3.78□□□□□ -1.8
COL18A1P39060 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.78□□□□□ -1.8
COL18A1P39060 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.78□□□□□ -1.8
COL18A1P39060 RPS20P32-201ENST00000456044 356 ntBASIC3.78□□□□□ -1.8
COL18A1P39060 AC114982.2-201ENST00000461396 358 ntBASIC3.78□□□□□ -1.8
COL18A1P39060 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
COL18A1P39060 FABP5P12-201ENST00000515543 389 ntBASIC3.78□□□□□ -1.8
COL18A1P39060 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.78□□□□□ -1.8
COL18A1P39060 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.78□□□□□ -1.8
COL18A1P39060 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL18A1P39060 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.78□□□□□ -1.8
COL18A1P39060 ELF2P3-201ENST00000445099 1506 ntBASIC3.78□□□□□ -1.8
COL18A1P39060 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.77□□□□□ -1.81
COL18A1P39060 RNU6-249P-201ENST00000363016 102 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 AL138827.1-201ENST00000402666 306 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 RNA5SP293-201ENST00000410527 113 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 RPL30P2-201ENST00000414021 291 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 HMGB3P6-201ENST00000444896 598 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.77□□□□□ -1.81
COL18A1P39060 EEF1B2P7-201ENST00000451177 676 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 HSPE1P6-201ENST00000479457 291 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.77□□□□□ -1.81
COL18A1P39060 AC007954.1-201ENST00000554198 494 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 MIR4524B-201ENST00000581569 115 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.77□□□□□ -1.81
COL18A1P39060 ELL2P4-201ENST00000446870 1376 ntBASIC3.77□□□□□ -1.81
COL18A1P39060 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL18A1P39060 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL18A1P39060 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.76□□□□□ -1.81
COL18A1P39060 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.76□□□□□ -1.81
COL18A1P39060 RPL7L1P1-201ENST00000448259 785 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 RPL29P29-201ENST00000448725 423 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC3.76□□□□□ -1.81
COL18A1P39060 AP000942.1-201ENST00000463969 747 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 ST13P14-201ENST00000474095 734 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 AC111000.5-201ENST00000506559 1178 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 SNORA31.21-201ENST00000517180 77 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.76□□□□□ -1.81
COL18A1P39060 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 AC234781.4-201ENST00000419384 244 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 AC013268.2-201ENST00000420753 337 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 TOMM20P4-201ENST00000427861 435 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 AL513328.1-201ENST00000446460 224 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.76□□□□□ -1.81
COL18A1P39060 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 AL390334.1-201ENST00000556395 450 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.76□□□□□ -1.81
COL18A1P39060 VN1R78P-201ENST00000597393 564 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 MIR7843-201ENST00000622274 79 ntBASIC3.76□□□□□ -1.81
COL18A1P39060 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.76□□□□□ -1.81
COL18A1P39060 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL18A1P39060 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.75□□□□□ -1.81
COL18A1P39060 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 TTC39DP-201ENST00000416781 1688 ntBASIC3.75□□□□□ -1.81
COL18A1P39060 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.75□□□□□ -1.81
COL18A1P39060 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 AL356057.3-201ENST00000402607 340 ntBASIC3.75□□□□□ -1.81
COL18A1P39060 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.75□□□□□ -1.81
COL18A1P39060 AC127526.1-201ENST00000417526 366 ntBASIC3.75□□□□□ -1.81
COL18A1P39060 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.75□□□□□ -1.81
COL18A1P39060 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL18A1P39060 AC126121.1-201ENST00000482313 553 ntBASIC3.75□□□□□ -1.81
COL18A1P39060 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.75□□□□□ -1.81
COL18A1P39060 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.75□□□□□ -1.81
COL18A1P39060 AC107016.2-201ENST00000547968 190 ntBASIC3.75□□□□□ -1.81
COL18A1P39060 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.75□□□□□ -1.81
COL18A1P39060 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.74□□□□□ -1.81
COL18A1P39060 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL18A1P39060 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
COL18A1P39060 AC002524.1-201ENST00000411687 547 ntBASIC3.74□□□□□ -1.81
COL18A1P39060 NECAP1P2-201ENST00000455668 727 ntBASIC3.74□□□□□ -1.81
COL18A1P39060 AC074140.1-201ENST00000621617 208 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms