Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC114967.1-201ENST00000504890 259 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC006390.1-201ENST00000508068 283 ntBASIC6.08□□□□□ -1.44
LIG1P18858 SCARNA21.2-201ENST00000516600 166 ntBASIC6.08□□□□□ -1.44
LIG1P18858 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC6.08□□□□□ -1.44
LIG1P18858 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIG1P18858 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.08□□□□□ -1.44
LIG1P18858 HIF1AP1-201ENST00000553642 175 ntBASIC6.08□□□□□ -1.44
LIG1P18858 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG1P18858 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG1P18858 AL157394.1-201ENST00000562983 1224 ntBASIC6.08□□□□□ -1.44
LIG1P18858 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG1P18858 RN7SL356P-201ENST00000582228 248 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC011712.1-201ENST00000588959 234 ntBASIC6.08□□□□□ -1.44
LIG1P18858 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.08□□□□□ -1.44
LIG1P18858 TPMTP1-201ENST00000592307 737 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AP001429.1-201ENST00000602568 530 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC009027.1-201ENST00000604510 479 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC011626.1-201ENST00000604710 562 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AL008729.2-201ENST00000606393 473 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC116447.1-201ENST00000613153 453 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AL512624.1-201ENST00000613638 469 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC002550.2-201ENST00000621246 394 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC009268.2-201ENST00000621925 457 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AL160413.1-201ENST00000622780 310 ntBASIC6.08□□□□□ -1.44
LIG1P18858 AC112198.2-201ENST00000426589 6996 ntBASIC6.08□□□□□ -1.44
LIG1P18858 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIG1P18858 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIG1P18858 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIG1P18858 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 ASNSP1-201ENST00000518311 1939 ntBASIC6.07□□□□□ -1.44
LIG1P18858 CASC19-221ENST00000641309 1382 ntBASIC6.07□□□□□ -1.44
LIG1P18858 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC6.07□□□□□ -1.44
LIG1P18858 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 LINC01963-201ENST00000562038 3148 ntBASIC6.07□□□□□ -1.44
LIG1P18858 GNG5P1-201ENST00000255500 204 ntBASIC6.07□□□□□ -1.44
LIG1P18858 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG1P18858 RNU6-1322P-201ENST00000364309 107 ntBASIC6.07□□□□□ -1.44
LIG1P18858 MIR143-201ENST00000385300 106 ntBASIC6.07□□□□□ -1.44
LIG1P18858 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 RNU6-603P-201ENST00000411403 107 ntBASIC6.07□□□□□ -1.44
LIG1P18858 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 MTND3P17-201ENST00000416968 344 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC048351.1-201ENST00000420064 602 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 AC073069.1-201ENST00000428657 441 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC133104.1-201ENST00000429100 218 ntBASIC6.07□□□□□ -1.44
LIG1P18858 CFL1P1-202ENST00000432948 411 ntBASIC6.07□□□□□ -1.44
LIG1P18858 RPL12P46-201ENST00000436610 195 ntBASIC6.07□□□□□ -1.44
LIG1P18858 HMGB3P12-201ENST00000438745 556 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC092013.1-201ENST00000438795 332 ntBASIC6.07□□□□□ -1.44
LIG1P18858 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 MTND1P12-201ENST00000455231 147 ntBASIC6.07□□□□□ -1.44
LIG1P18858 BTF3P5-201ENST00000457252 467 ntBASIC6.07□□□□□ -1.44
LIG1P18858 RPS20P20-201ENST00000460498 340 ntBASIC6.07□□□□□ -1.44
LIG1P18858 RPS4XP1-201ENST00000482189 787 ntBASIC6.07□□□□□ -1.44
LIG1P18858 UBA52P7-201ENST00000486088 380 ntBASIC6.07□□□□□ -1.44
LIG1P18858 RPL36AP51-201ENST00000487216 318 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC6.07□□□□□ -1.44
LIG1P18858 RN7SKP283-201ENST00000517197 270 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC6.07□□□□□ -1.44
LIG1P18858 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 IGHVIII-67-4-201ENST00000524281 296 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG1P18858 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.07□□□□□ -1.44
LIG1P18858 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.07□□□□□ -1.44
LIG1P18858 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 AC007225.2-201ENST00000562529 256 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AL390726.5-202ENST00000564800 256 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC107954.1-201ENST00000565906 727 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 AC022884.3-201ENST00000579571 248 ntBASIC6.07□□□□□ -1.44
LIG1P18858 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 YWHAQP7-201ENST00000603536 658 ntBASIC6.07□□□□□ -1.44
LIG1P18858 AC007621.1-201ENST00000604544 437 ntBASIC6.07□□□□□ -1.44
LIG1P18858 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 AL132765.2-201ENST00000610812 351 ntBASIC6.07□□□□□ -1.44
LIG1P18858 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
LIG1P18858 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 AC025125.1-201ENST00000624743 1922 ntBASIC6.07□□□□□ -1.44
LIG1P18858 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.07□□□□□ -1.44
LIG1P18858 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIG1P18858 AC093535.2-201ENST00000624769 2326 ntBASIC6.07□□□□□ -1.44
LIG1P18858 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIG1P18858 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
LIG1P18858 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
LIG1P18858 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
LIG1P18858 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms