Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL121657.1-201ENST00000327215 531 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 MIR506-201ENST00000384998 124 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AL121972.1-201ENST00000402023 252 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 RNU2-42P-201ENST00000410697 113 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 RN7SKP182-201ENST00000410772 298 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 RNU4-22P-201ENST00000411058 166 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC092648.1-201ENST00000425870 423 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 GSTA7P-201ENST00000438425 448 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 ABCF2P2-201ENST00000450549 296 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 PTGES3P5-201ENST00000455109 434 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 RPS20P32-201ENST00000456044 356 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 RPL7P19-201ENST00000469948 618 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC103987.1-201ENST00000473394 348 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC104164.2-201ENST00000496953 495 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 MTCO1P35-201ENST00000515270 228 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 PHBP17-201ENST00000528576 541 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 TRAV15-201ENST00000556680 249 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 AL669831.4-202ENST00000590817 238 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 MIR432-201ENST00000606207 94 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC092653.1-201ENST00000608509 531 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 AC138649.5-201ENST00000637456 137 ntBASIC4.33□□□□□ -1.72
VPS28Q9UK41 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS28Q9UK41 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS28Q9UK41 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 XIAPP3-201ENST00000312918 795 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 RNU6-730P-201ENST00000383954 104 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 MIR1179-201ENST00000408703 91 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 RNA5SP56-201ENST00000410277 118 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AL161449.1-201ENST00000414531 1199 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC007327.1-201ENST00000447461 264 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AL009048.1-201ENST00000450437 298 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC092155.2-201ENST00000454675 477 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 PABPC1P3-201ENST00000469174 459 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 SYPL1P1-201ENST00000473622 768 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 RPS26P15-201ENST00000488067 348 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AF213884.1-201ENST00000488102 463 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 RPS27AP13-201ENST00000498403 237 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC099522.1-202ENST00000514718 367 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC105233.3-201ENST00000531125 744 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 TOMM20P2-201ENST00000540082 421 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AL132857.1-201ENST00000555180 708 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC025884.1-201ENST00000556034 378 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AADACP1-206ENST00000561502 1193 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AL049838.1-201ENST00000563647 981 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC015688.2-201ENST00000584523 262 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 MTCO2P2-201ENST00000591258 225 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 DPRXP5-201ENST00000604662 539 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC016877.3-201ENST00000606778 504 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AP001521.1-201ENST00000609150 300 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC073968.1-201ENST00000618594 637 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC022509.4-201ENST00000621404 572 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AF001550.2-201ENST00000636643 217 ntBASIC4.32□□□□□ -1.72
VPS28Q9UK41 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS28Q9UK41 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS28Q9UK41 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms