Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 FTH1P9-201ENST00000513251 355 ntBASIC3.75□□□□□ -1.81
SDC3O75056 IGKV2-38-201ENST00000517443 247 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.75□□□□□ -1.81
SDC3O75056 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.75□□□□□ -1.81
SDC3O75056 AC104115.2-201ENST00000523026 687 ntBASIC3.75□□□□□ -1.81
SDC3O75056 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SDC3O75056 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.75□□□□□ -1.81
SDC3O75056 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.75□□□□□ -1.81
SDC3O75056 AC141257.3-201ENST00000572906 215 ntBASIC3.75□□□□□ -1.81
SDC3O75056 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.75□□□□□ -1.81
SDC3O75056 AC008687.2-201ENST00000597865 520 ntBASIC3.75□□□□□ -1.81
SDC3O75056 YWHAQP7-201ENST00000603536 658 ntBASIC3.75□□□□□ -1.81
SDC3O75056 BNIP3P4-201ENST00000604946 565 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AC012603.1-201ENST00000606424 528 ntBASIC3.75□□□□□ -1.81
SDC3O75056 U3.45-201ENST00000607547 219 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AC091953.5-201ENST00000622919 233 ntBASIC3.75□□□□□ -1.81
SDC3O75056 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.75□□□□□ -1.81
SDC3O75056 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.75□□□□□ -1.81
SDC3O75056 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SDC3O75056 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SDC3O75056 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.75□□□□□ -1.81
SDC3O75056 AC107081.3-201ENST00000612715 2034 ntBASIC3.75□□□□□ -1.81
SDC3O75056 MTND5P3-201ENST00000438536 1800 ntBASIC3.74□□□□□ -1.81
SDC3O75056 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.74□□□□□ -1.81
SDC3O75056 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 RNA5SP167-201ENST00000365461 116 ntBASIC3.74□□□□□ -1.81
SDC3O75056 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 RPL17P50-201ENST00000396131 546 ntBASIC3.74□□□□□ -1.81
SDC3O75056 RPL7P60-201ENST00000397636 735 ntBASIC3.74□□□□□ -1.81
SDC3O75056 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 FO393414.1-201ENST00000428697 1184 ntBASIC3.74□□□□□ -1.81
SDC3O75056 RPL21P110-201ENST00000433345 446 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 HMGB1P37-201ENST00000439613 609 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 GXYLT1P1-201ENST00000446657 490 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AC104978.1-201ENST00000449387 391 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.74□□□□□ -1.81
SDC3O75056 BX248409.1-201ENST00000455497 255 ntBASIC3.74□□□□□ -1.81
SDC3O75056 PLGLA-201ENST00000465668 449 ntBASIC3.74□□□□□ -1.81
SDC3O75056 RPL21P18-201ENST00000469899 480 ntBASIC3.74□□□□□ -1.81
SDC3O75056 SNX5P1-201ENST00000505757 1041 ntBASIC3.74□□□□□ -1.81
SDC3O75056 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 AC017037.1-201ENST00000508460 471 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AF279873.1-201ENST00000523393 313 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 AC124293.1-201ENST00000530034 493 ntBASIC3.74□□□□□ -1.81
SDC3O75056 OR6C73P-201ENST00000546432 358 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AGGF1P8-201ENST00000562979 1000 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC3O75056 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.74□□□□□ -1.81
SDC3O75056 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 AC005014.3-201ENST00000605985 190 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AL713922.2-201ENST00000619384 716 ntBASIC3.74□□□□□ -1.81
SDC3O75056 AC015967.1-201ENST00000619893 476 ntBASIC3.74□□□□□ -1.81
SDC3O75056 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 AC004943.3-201ENST00000624116 600 ntBASIC3.74□□□□□ -1.81
SDC3O75056 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC3O75056 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC3O75056 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.73□□□□□ -1.81
SDC3O75056 AL161912.2-201ENST00000565707 3007 ntBASIC3.73□□□□□ -1.81
SDC3O75056 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.73□□□□□ -1.81
SDC3O75056 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SDC3O75056 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
SDC3O75056 RNA5SP51-201ENST00000364750 119 ntBASIC3.73□□□□□ -1.81
SDC3O75056 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 AL355615.1-201ENST00000406187 641 ntBASIC3.73□□□□□ -1.81
SDC3O75056 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC3O75056 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 RPL7P53-201ENST00000421245 739 ntBASIC3.73□□□□□ -1.81
SDC3O75056 UBE2V1P1-201ENST00000430836 445 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC3O75056 AC002542.1-201ENST00000440683 193 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 AL050341.1-201ENST00000447743 313 ntBASIC3.73□□□□□ -1.81
SDC3O75056 PRDX3P3-201ENST00000447765 522 ntBASIC3.73□□□□□ -1.81
SDC3O75056 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC3O75056 AP000873.1-201ENST00000463987 400 ntBASIC3.73□□□□□ -1.81
SDC3O75056 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC3O75056 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms