Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.14■□□□□ 0.33
CLCF1Q9UBD9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 INGX-201ENST00000359239 846 ntBASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 ECEL1P2-202ENST00000465689 757 ntBASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 CKBP1-201ENST00000565489 1086 ntBASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 FAM87A-204ENST00000613235 858 ntBASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 SLC25A24-204ENST00000569674 2357 ntBASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 AC073508.3-201ENST00000619697 1419 ntBASIC17.13■□□□□ 0.33
CLCF1Q9UBD9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 AL137013.1-201ENST00000432946 1228 ntBASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 CCR12P-201ENST00000446203 998 ntBASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 AC010331.1-201ENST00000611423 582 ntBASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 AC116562.4-202ENST00000641738 218 ntBASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLCF1Q9UBD9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 KRT18P57-201ENST00000443599 1254 ntBASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 CA15P1-201ENST00000481698 905 ntBASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 PRSS44-201ENST00000515154 1146 ntBASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.11■□□□□ 0.33
CLCF1Q9UBD9 KRT8P11-201ENST00000409686 1436 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms