Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 AL117328.2-201ENST00000624617 1940 ntBASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.88■■□□□ 1.25
SMC1BQ8NDV3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 TMEM179-206ENST00000616017 1645 ntBASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 PHGDH-210ENST00000641115 1638 ntBASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 MOK-208ENST00000519058 917 ntTSL 2 BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SMC1BQ8NDV3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 CFL1-212ENST00000531413 636 ntTSL 3 BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 MIR4674-201ENST00000582457 87 ntBASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SMC1BQ8NDV3 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 AC074051.2-201ENST00000565115 352 ntBASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
SMC1BQ8NDV3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 KRT8P41-201ENST00000533985 1514 ntBASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 ECEL1P1-201ENST00000373592 1742 ntBASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
SMC1BQ8NDV3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 MIR940-201ENST00000401276 94 ntBASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 HNRNPA1P28-201ENST00000424481 961 ntBASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 REXO1L6P-202ENST00000619970 1078 ntBASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 TP73-AS1-207ENST00000624167 988 ntBASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SMC1BQ8NDV3 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 AC242852.2-201ENST00000615738 1807 ntBASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 TK1-205ENST00000590862 642 ntTSL 3 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 AC099336.1-202ENST00000602961 463 ntBASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SMC1BQ8NDV3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms