Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 PCDHAC2-203ENST00000615316 3011 ntBASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CSPG4Q6UVK1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 SPDYE13P-201ENST00000445314 798 ntBASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 ZNF444P1-201ENST00000559497 298 ntBASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.88■□□□□ 0.13
CSPG4Q6UVK1 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 GCSHP2-201ENST00000560971 527 ntBASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.87■□□□□ 0.13
CSPG4Q6UVK1 EMBP1-201ENST00000458200 901 ntBASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 AC092597.1-201ENST00000487352 616 ntBASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 AL732292.2-201ENST00000609649 430 ntBASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 KRT16P6-202ENST00000425692 1426 ntBASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 HMGN1P19-201ENST00000436976 333 ntBASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 LINC02084-201ENST00000606069 1096 ntBASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CSPG4Q6UVK1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms