Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RNF43Q68DV7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.21■□□□□ 0.83
RNF43Q68DV7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
RNF43Q68DV7 AC005332.7-201ENST00000614046 2005 ntBASIC20.2■□□□□ 0.83
RNF43Q68DV7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF43Q68DV7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF43Q68DV7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 AC073195.1-201ENST00000607241 877 ntBASIC20.2■□□□□ 0.82
RNF43Q68DV7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF43Q68DV7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF43Q68DV7 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF43Q68DV7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.2■□□□□ 0.82
RNF43Q68DV7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF43Q68DV7 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF43Q68DV7 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF43Q68DV7 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF43Q68DV7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF43Q68DV7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF43Q68DV7 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.18■□□□□ 0.82
RNF43Q68DV7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 NIFKP9-201ENST00000419265 221 ntBASIC20.18■□□□□ 0.82
RNF43Q68DV7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RNF43Q68DV7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF43Q68DV7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.17■□□□□ 0.82
RNF43Q68DV7 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF43Q68DV7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF43Q68DV7 AP001271.2-201ENST00000624018 1556 ntBASIC20.17■□□□□ 0.82
RNF43Q68DV7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF43Q68DV7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF43Q68DV7 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF43Q68DV7 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF43Q68DV7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF43Q68DV7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF43Q68DV7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF43Q68DV7 MMP23A-201ENST00000234610 1017 ntBASIC20.16■□□□□ 0.82
RNF43Q68DV7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF43Q68DV7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
RNF43Q68DV7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
RNF43Q68DV7 AC026471.5-201ENST00000615068 467 ntBASIC20.16■□□□□ 0.82
RNF43Q68DV7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms