Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.48■□□□□ 0.87
CHD9Q3L8U1 MIR574-201ENST00000385209 96 ntBASIC20.48■□□□□ 0.87
CHD9Q3L8U1 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 SLC25A1P1-201ENST00000528351 927 ntBASIC20.47■□□□□ 0.87
CHD9Q3L8U1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 TPSP2-201ENST00000561760 610 ntBASIC20.47■□□□□ 0.87
CHD9Q3L8U1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.47■□□□□ 0.87
CHD9Q3L8U1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 AC026310.3-201ENST00000625186 2373 ntBASIC20.46■□□□□ 0.87
CHD9Q3L8U1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 KRT18P13-201ENST00000400056 1290 ntBASIC20.46■□□□□ 0.87
CHD9Q3L8U1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHD9Q3L8U1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 LINC00167-201ENST00000530583 1419 ntBASIC20.45■□□□□ 0.86
CHD9Q3L8U1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 AC006128.1-201ENST00000624704 1661 ntBASIC20.45■□□□□ 0.86
CHD9Q3L8U1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHD9Q3L8U1 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 IL9RP2-201ENST00000423948 1312 ntBASIC20.44■□□□□ 0.86
CHD9Q3L8U1 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHD9Q3L8U1 AC079776.4-201ENST00000511039 504 ntBASIC20.44■□□□□ 0.86
CHD9Q3L8U1 AC091304.2-201ENST00000564639 760 ntBASIC20.44■□□□□ 0.86
CHD9Q3L8U1 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 AC133561.1-201ENST00000568600 2415 ntBASIC20.43■□□□□ 0.86
CHD9Q3L8U1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms