Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 LINC01311-201ENST00000565162 1445 ntBASIC19.66■□□□□ 0.74
COL4A3Q01955 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A3Q01955 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A3Q01955 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A3Q01955 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.66■□□□□ 0.74
COL4A3Q01955 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A3Q01955 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL4A3Q01955 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A3Q01955 AL391422.3-201ENST00000603791 2761 ntBASIC19.66■□□□□ 0.74
COL4A3Q01955 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.66■□□□□ 0.74
COL4A3Q01955 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A3Q01955 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A3Q01955 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A3Q01955 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A3Q01955 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A3Q01955 STARP1-201ENST00000397973 869 ntBASIC19.65■□□□□ 0.74
COL4A3Q01955 ATP5G2P1-201ENST00000433580 426 ntBASIC19.65■□□□□ 0.74
COL4A3Q01955 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.65■□□□□ 0.74
COL4A3Q01955 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A3Q01955 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
COL4A3Q01955 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A3Q01955 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A3Q01955 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A3Q01955 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
COL4A3Q01955 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A3Q01955 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A3Q01955 AC092119.3-201ENST00000612618 583 ntBASIC19.65■□□□□ 0.74
COL4A3Q01955 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A3Q01955 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A3Q01955 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.74
COL4A3Q01955 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.64■□□□□ 0.74
COL4A3Q01955 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
COL4A3Q01955 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 AP000523.1-201ENST00000398242 1049 ntBASIC19.64■□□□□ 0.73
COL4A3Q01955 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A3Q01955 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
COL4A3Q01955 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COL4A3Q01955 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A3Q01955 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A3Q01955 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A3Q01955 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A3Q01955 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
COL4A3Q01955 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A3Q01955 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A3Q01955 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A3Q01955 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL4A3Q01955 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.63■□□□□ 0.73
COL4A3Q01955 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.63■□□□□ 0.73
COL4A3Q01955 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
COL4A3Q01955 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A3Q01955 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.63■□□□□ 0.73
COL4A3Q01955 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A3Q01955 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A3Q01955 AC104417.2-201ENST00000562989 1793 ntBASIC19.63■□□□□ 0.73
COL4A3Q01955 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A3Q01955 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A3Q01955 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
COL4A3Q01955 HBZP1-201ENST00000354915 429 ntBASIC19.62■□□□□ 0.73
COL4A3Q01955 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A3Q01955 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL4A3Q01955 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A3Q01955 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A3Q01955 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A3Q01955 AC140113.3-201ENST00000605663 199 ntBASIC19.62■□□□□ 0.73
COL4A3Q01955 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.62■□□□□ 0.73
COL4A3Q01955 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A3Q01955 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A3Q01955 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A3Q01955 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A3Q01955 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A3Q01955 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A3Q01955 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A3Q01955 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A3Q01955 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A3Q01955 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms