Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
COL4A5P29400 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.21■■□□□ 1.31
COL4A5P29400 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC23.21■■□□□ 1.31
COL4A5P29400 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A5P29400 AL121672.3-201ENST00000608644 468 ntBASIC23.21■■□□□ 1.31
COL4A5P29400 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
COL4A5P29400 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A5P29400 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
COL4A5P29400 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
COL4A5P29400 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
COL4A5P29400 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.21■■□□□ 1.31
COL4A5P29400 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A5P29400 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL4A5P29400 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL4A5P29400 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.2■■□□□ 1.31
COL4A5P29400 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A5P29400 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A5P29400 BX276092.5-203ENST00000456199 560 ntBASIC23.2■■□□□ 1.3
COL4A5P29400 TPSP2-201ENST00000561760 610 ntBASIC23.2■■□□□ 1.3
COL4A5P29400 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A5P29400 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
COL4A5P29400 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A5P29400 AC093525.10-201ENST00000625130 1569 ntBASIC23.2■■□□□ 1.3
COL4A5P29400 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A5P29400 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC23.2■■□□□ 1.3
COL4A5P29400 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A5P29400 AL691432.2-201ENST00000607222 2038 ntBASIC23.2■■□□□ 1.3
COL4A5P29400 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.2■■□□□ 1.3
COL4A5P29400 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.19■■□□□ 1.3
COL4A5P29400 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
COL4A5P29400 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.19■■□□□ 1.3
COL4A5P29400 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
COL4A5P29400 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC23.19■■□□□ 1.3
COL4A5P29400 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.19■■□□□ 1.3
COL4A5P29400 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
COL4A5P29400 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC23.19■■□□□ 1.3
COL4A5P29400 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 AL162741.1-201ENST00000565563 1558 ntBASIC23.19■■□□□ 1.3
COL4A5P29400 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.19■■□□□ 1.3
COL4A5P29400 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
COL4A5P29400 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
COL4A5P29400 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A5P29400 AL022342.1-201ENST00000400363 863 ntBASIC23.19■■□□□ 1.3
COL4A5P29400 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.19■■□□□ 1.3
COL4A5P29400 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC23.19■■□□□ 1.3
COL4A5P29400 AL671883.3-201ENST00000603274 991 ntBASIC23.19■■□□□ 1.3
COL4A5P29400 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.19■■□□□ 1.3
COL4A5P29400 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC23.18■■□□□ 1.3
COL4A5P29400 AC012676.1-201ENST00000574705 1949 ntBASIC23.18■■□□□ 1.3
COL4A5P29400 GAD2-202ENST00000376248 680 ntTSL 5 BASIC23.18■■□□□ 1.3
COL4A5P29400 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A5P29400 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC23.18■■□□□ 1.3
COL4A5P29400 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC23.18■■□□□ 1.3
COL4A5P29400 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A5P29400 KRT18P1-202ENST00000452408 1331 ntBASIC23.18■■□□□ 1.3
COL4A5P29400 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
COL4A5P29400 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.17■■□□□ 1.3
COL4A5P29400 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A5P29400 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A5P29400 SEC1P-202ENST00000473944 940 ntBASIC23.17■■□□□ 1.3
COL4A5P29400 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.17■■□□□ 1.3
COL4A5P29400 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC23.17■■□□□ 1.3
COL4A5P29400 SLC25A6P4-201ENST00000586535 553 ntBASIC23.17■■□□□ 1.3
COL4A5P29400 AC024243.1-201ENST00000609234 778 ntBASIC23.17■■□□□ 1.3
COL4A5P29400 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A5P29400 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A5P29400 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC23.17■■□□□ 1.3
COL4A5P29400 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A5P29400 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A5P29400 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A5P29400 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A5P29400 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
COL4A5P29400 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
COL4A5P29400 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC23.16■■□□□ 1.3
COL4A5P29400 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC23.16■■□□□ 1.3
COL4A5P29400 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC23.16■■□□□ 1.3
COL4A5P29400 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.16■■□□□ 1.3
COL4A5P29400 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC23.16■■□□□ 1.3
COL4A5P29400 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 AP005212.1-201ENST00000581547 1997 ntBASIC23.16■■□□□ 1.3
COL4A5P29400 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.16■■□□□ 1.3
COL4A5P29400 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A5P29400 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms