Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
COL4A2P08572 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.48■□□□□ 0.71
COL4A2P08572 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.48■□□□□ 0.71
COL4A2P08572 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL4A2P08572 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.48■□□□□ 0.71
COL4A2P08572 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
COL4A2P08572 AC093525.10-201ENST00000625130 1569 ntBASIC19.48■□□□□ 0.71
COL4A2P08572 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL4A2P08572 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
COL4A2P08572 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.48■□□□□ 0.71
COL4A2P08572 GPAT2P1-201ENST00000444924 1672 ntBASIC19.48■□□□□ 0.71
COL4A2P08572 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL4A2P08572 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.48■□□□□ 0.71
COL4A2P08572 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.48■□□□□ 0.71
COL4A2P08572 AC092597.1-201ENST00000487352 616 ntBASIC19.48■□□□□ 0.71
COL4A2P08572 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.47■□□□□ 0.71
COL4A2P08572 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.47■□□□□ 0.71
COL4A2P08572 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.47■□□□□ 0.71
COL4A2P08572 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COL4A2P08572 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
COL4A2P08572 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.47■□□□□ 0.71
COL4A2P08572 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.47■□□□□ 0.71
COL4A2P08572 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.47■□□□□ 0.71
COL4A2P08572 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL4A2P08572 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL4A2P08572 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.46■□□□□ 0.71
COL4A2P08572 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.46■□□□□ 0.71
COL4A2P08572 IFNL4P1-201ENST00000607083 540 ntBASIC19.46■□□□□ 0.71
COL4A2P08572 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.46■□□□□ 0.71
COL4A2P08572 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.46■□□□□ 0.71
COL4A2P08572 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.46■□□□□ 0.71
COL4A2P08572 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL4A2P08572 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.45■□□□□ 0.7
COL4A2P08572 SEC1P-202ENST00000473944 940 ntBASIC19.45■□□□□ 0.7
COL4A2P08572 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.45■□□□□ 0.7
COL4A2P08572 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.45■□□□□ 0.7
COL4A2P08572 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A2P08572 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 AL162377.1-201ENST00000618844 1793 ntBASIC19.45■□□□□ 0.7
COL4A2P08572 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
COL4A2P08572 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
COL4A2P08572 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A2P08572 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.45■□□□□ 0.7
COL4A2P08572 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL4A2P08572 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL4A2P08572 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A2P08572 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A2P08572 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A2P08572 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL4A2P08572 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms