Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A1P02462 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
COL4A1P02462 GOLGA6L5P-202ENST00000515341 1828 ntBASIC23.64■■□□□ 1.38
COL4A1P02462 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A1P02462 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL4A1P02462 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC23.64■■□□□ 1.38
COL4A1P02462 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC23.64■■□□□ 1.38
COL4A1P02462 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.64■■□□□ 1.38
COL4A1P02462 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 IER3-202ENST00000376377 1350 ntBASIC23.64■■□□□ 1.37
COL4A1P02462 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.64■■□□□ 1.37
COL4A1P02462 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 AP000523.1-201ENST00000398242 1049 ntBASIC23.64■■□□□ 1.37
COL4A1P02462 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC23.64■■□□□ 1.37
COL4A1P02462 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
COL4A1P02462 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC23.63■■□□□ 1.37
COL4A1P02462 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC23.63■■□□□ 1.37
COL4A1P02462 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 AC036111.1-201ENST00000533973 1582 ntBASIC23.63■■□□□ 1.37
COL4A1P02462 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC23.63■■□□□ 1.37
COL4A1P02462 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL4A1P02462 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.62■■□□□ 1.37
COL4A1P02462 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A1P02462 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.62■■□□□ 1.37
COL4A1P02462 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC23.62■■□□□ 1.37
COL4A1P02462 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A1P02462 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.62■■□□□ 1.37
COL4A1P02462 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A1P02462 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A1P02462 FXN-203ENST00000396366 922 ntTSL 2 BASIC23.62■■□□□ 1.37
COL4A1P02462 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A1P02462 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC23.62■■□□□ 1.37
COL4A1P02462 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC23.62■■□□□ 1.37
COL4A1P02462 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC23.62■■□□□ 1.37
COL4A1P02462 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
COL4A1P02462 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A1P02462 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC23.62■■□□□ 1.37
COL4A1P02462 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL4A1P02462 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
COL4A1P02462 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC23.61■■□□□ 1.37
COL4A1P02462 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC23.61■■□□□ 1.37
COL4A1P02462 KRT18P56-201ENST00000507275 550 ntBASIC23.61■■□□□ 1.37
COL4A1P02462 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC23.61■■□□□ 1.37
COL4A1P02462 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC23.61■■□□□ 1.37
COL4A1P02462 DBP-204ENST00000599385 709 ntTSL 3 BASIC23.61■■□□□ 1.37
COL4A1P02462 AC012313.10-201ENST00000623509 926 ntBASIC23.61■■□□□ 1.37
COL4A1P02462 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
COL4A1P02462 GPAT2P1-201ENST00000444924 1672 ntBASIC23.61■■□□□ 1.37
COL4A1P02462 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC23.61■■□□□ 1.37
COL4A1P02462 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.61■■□□□ 1.37
COL4A1P02462 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL4A1P02462 CNP-204ENST00000472031 1019 ntTSL 2 BASIC23.6■■□□□ 1.37
COL4A1P02462 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC23.6■■□□□ 1.37
COL4A1P02462 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
COL4A1P02462 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL4A1P02462 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
COL4A1P02462 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.6■■□□□ 1.37
COL4A1P02462 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC23.6■■□□□ 1.37
COL4A1P02462 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL4A1P02462 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.6■■□□□ 1.37
COL4A1P02462 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
COL4A1P02462 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
COL4A1P02462 HOMER2P1-201ENST00000455653 964 ntBASIC23.6■■□□□ 1.37
COL4A1P02462 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
COL4A1P02462 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC23.6■■□□□ 1.37
COL4A1P02462 AC125437.2-201ENST00000625180 2167 ntBASIC23.6■■□□□ 1.37
COL4A1P02462 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC23.59■■□□□ 1.37
COL4A1P02462 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC23.59■■□□□ 1.37
COL4A1P02462 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC23.59■■□□□ 1.37
COL4A1P02462 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.59■■□□□ 1.37
COL4A1P02462 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
COL4A1P02462 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
COL4A1P02462 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.59■■□□□ 1.37
COL4A1P02462 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC23.59■■□□□ 1.37
COL4A1P02462 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms