Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC11O43248 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC11O43248 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
HOXC11O43248 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXC11O43248 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HOXC11O43248 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXC11O43248 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HOXC11O43248 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HOXC11O43248 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HOXC11O43248 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HOXC11O43248 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC11O43248 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC11O43248 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HOXC11O43248 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HOXC11O43248 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXC11O43248 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
HOXC11O43248 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXC11O43248 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 TSPY5P-201ENST00000426936 936 ntBASIC19.62■□□□□ 0.73
HOXC11O43248 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.62■□□□□ 0.73
HOXC11O43248 AL031432.5-201ENST00000641059 760 ntBASIC19.62■□□□□ 0.73
HOXC11O43248 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HOXC11O43248 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC11O43248 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXC11O43248 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
HOXC11O43248 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC11O43248 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXC11O43248 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXC11O43248 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
HOXC11O43248 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HOXC11O43248 MYC-208ENST00000641036 567 ntBASIC19.61■□□□□ 0.73
HOXC11O43248 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HOXC11O43248 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXC11O43248 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC11O43248 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC11O43248 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
HOXC11O43248 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC11O43248 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC11O43248 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC11O43248 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXC11O43248 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.6■□□□□ 0.73
HOXC11O43248 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.6■□□□□ 0.73
HOXC11O43248 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC11O43248 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXC11O43248 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXC11O43248 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC11O43248 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXC11O43248 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC11O43248 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC11O43248 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.6■□□□□ 0.73
HOXC11O43248 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HOXC11O43248 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXC11O43248 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXC11O43248 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXC11O43248 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC11O43248 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms