Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ATP5HP3-201ENST00000396994 486 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RPS24P12-201ENST00000402084 394 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AL354719.1-201ENST00000406535 843 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RNU6-908P-201ENST00000410160 94 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RNA5SP118-201ENST00000410385 109 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 FCF1P1-201ENST00000432690 571 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC024082.2-201ENST00000434771 238 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC002486.1-201ENST00000435098 391 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 HMGB1P45-201ENST00000435986 653 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 PGBD4P3-201ENST00000440731 581 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 MRPL50P4-201ENST00000446432 475 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 GAPDHP17-201ENST00000449858 1001 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC144530.1-201ENST00000452862 555 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 MTCO3P20-201ENST00000454926 688 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC096741.1-201ENST00000472250 846 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 HMGN2P25-201ENST00000486956 268 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RPS15AP36-201ENST00000492022 382 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RN7SL447P-201ENST00000494711 245 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 KCTD9P5-201ENST00000504141 1170 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 HMGB1P40-201ENST00000525121 540 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 MIR5697-201ENST00000578045 78 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AL390838.2-201ENST00000602394 274 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC011815.3-201ENST00000624194 473 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 AC074101.1-201ENST00000637861 241 ntBASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.01□□□□□ -1.45
CCDC39Q9UFE4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC39Q9UFE4 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 RNU5D-1-201ENST00000363299 116 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 RNU6-196P-201ENST00000384315 107 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC39Q9UFE4 MIR1284-201ENST00000408337 120 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 OR1AA1P-201ENST00000419597 916 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AL592293.2-201ENST00000422292 996 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 CYCSP11-201ENST00000436426 315 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 RPL35AP21-201ENST00000437667 333 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC016691.1-201ENST00000441321 413 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AL583843.1-201ENST00000456070 346 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC079168.1-201ENST00000458741 345 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 RPL7P48-201ENST00000461513 746 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC058823.1-201ENST00000485315 474 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 RN7SL591P-201ENST00000496150 292 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 THAP6-203ENST00000502620 582 ntTSL 3 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC139783.2-201ENST00000504847 1145 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 BTF3P13-201ENST00000513224 490 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC010493.1-201ENST00000513479 292 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 RN7SKP46-201ENST00000515942 234 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC6□□□□□ -1.45
CCDC39Q9UFE4 GTF2IP8-201ENST00000560687 584 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 KPNA2P3-201ENST00000584190 848 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AL162413.1-201ENST00000603198 110 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 7SK.7-201ENST00000603504 247 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 RMST_3.1-201ENST00000611651 109 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AL356274.1-201ENST00000617064 410 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC090971.5-201ENST00000621102 293 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 RMST_7.1-201ENST00000621935 268 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC093591.3-201ENST00000634516 308 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC119674.1-207ENST00000641355 633 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC39Q9UFE4 AC083843.3-201ENST00000623679 2186 ntBASIC6□□□□□ -1.45
CCDC39Q9UFE4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC39Q9UFE4 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 VPS35P1-201ENST00000563400 1518 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 AL031985.3-201ENST00000565390 2449 ntBASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC39Q9UFE4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms