Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RPS27AP17-201ENST00000463344 455 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 RN7SL303P-201ENST00000469773 251 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AP000893.1-201ENST00000474462 794 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
NUP88Q99567 RN7SL810P-201ENST00000493031 276 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.21□□□□□ -1.58
NUP88Q99567 AC090071.1-201ENST00000507713 644 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AC005178.1-201ENST00000508392 440 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
NUP88Q99567 AC117532.1-201ENST00000514638 323 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP88Q99567 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP88Q99567 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.21□□□□□ -1.58
NUP88Q99567 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.21□□□□□ -1.58
NUP88Q99567 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP88Q99567 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.21□□□□□ -1.58
NUP88Q99567 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC5.21□□□□□ -1.58
NUP88Q99567 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.21□□□□□ -1.58
NUP88Q99567 DPRXP4-201ENST00000578053 568 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC5.21□□□□□ -1.58
NUP88Q99567 AC245008.1-201ENST00000608123 476 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.21□□□□□ -1.58
NUP88Q99567 MTND5P24-201ENST00000438892 1767 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP88Q99567 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP88Q99567 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
NUP88Q99567 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 LINC00622-201ENST00000562811 1570 ntBASIC5.21□□□□□ -1.58
NUP88Q99567 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
NUP88Q99567 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NUP88Q99567 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
NUP88Q99567 AC125257.1-201ENST00000560400 2930 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 MIR331-201ENST00000362302 94 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 CYCSP45-201ENST00000402289 315 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 RNU6-920P-201ENST00000410926 92 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.2□□□□□ -1.58
NUP88Q99567 MTCYBP38-201ENST00000417160 1123 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 RPL30P3-201ENST00000424262 333 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 BX119904.4-201ENST00000424402 301 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AL138785.1-201ENST00000425821 331 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AC073335.1-201ENST00000427776 363 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.2□□□□□ -1.58
NUP88Q99567 AC011998.1-201ENST00000433403 117 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 BMS1P19-201ENST00000433925 393 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 MTND4P6-201ENST00000438297 472 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 RPL39P6-201ENST00000448289 150 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AC053481.1-201ENST00000467217 306 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.2□□□□□ -1.58
NUP88Q99567 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC5.2□□□□□ -1.58
NUP88Q99567 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.2□□□□□ -1.58
NUP88Q99567 TRAV8-5-201ENST00000537369 341 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.2□□□□□ -1.58
NUP88Q99567 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.2□□□□□ -1.58
NUP88Q99567 NBR2-204ENST00000587322 63 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
NUP88Q99567 AF131215.7-201ENST00000602443 707 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AL022161.1-201ENST00000604390 213 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AC005086.4-201ENST00000623065 213 ntBASIC5.2□□□□□ -1.58
NUP88Q99567 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.2□□□□□ -1.58
NUP88Q99567 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
NUP88Q99567 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
NUP88Q99567 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
NUP88Q99567 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NUP88Q99567 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
NUP88Q99567 AL079343.1-201ENST00000572358 1771 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
NUP88Q99567 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
NUP88Q99567 SNORD116-9-201ENST00000384000 95 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 SNORD116-3-201ENST00000384287 95 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 SNORD116-7-201ENST00000384404 95 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 SNORD116-5-201ENST00000384462 95 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 AL031577.2-201ENST00000404133 280 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.19□□□□□ -1.58
NUP88Q99567 AC011933.1-201ENST00000413334 321 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.19□□□□□ -1.58
NUP88Q99567 OR6C64P-201ENST00000419708 825 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5.19□□□□□ -1.58
NUP88Q99567 ISCA1P2-201ENST00000438679 421 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 AC012671.1-201ENST00000451912 203 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 TRBV26-201ENST00000456572 344 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 AC116533.1-201ENST00000459748 321 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 FAM172BP-201ENST00000487497 1089 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 AHI1-208ENST00000488690 712 ntTSL 5 BASIC5.19□□□□□ -1.58
NUP88Q99567 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC5.19□□□□□ -1.58
NUP88Q99567 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.19□□□□□ -1.58
NUP88Q99567 DSTNP2-201ENST00000504533 515 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.19□□□□□ -1.58
NUP88Q99567 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.19□□□□□ -1.58
NUP88Q99567 AC135279.1-201ENST00000543493 504 ntBASIC5.19□□□□□ -1.58
NUP88Q99567 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
NUP88Q99567 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
NUP88Q99567 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.19□□□□□ -1.58
NUP88Q99567 AL389895.1-201ENST00000554127 252 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms