Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC024560.2-201ENST00000507981 1497 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 SNORD65C-201ENST00000390962 71 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 PTMAP5-201ENST00000393073 333 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 CYCSP19-201ENST00000411715 316 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 RPL36AP36-201ENST00000418616 301 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 PAICSP7-201ENST00000419829 962 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 RPL17P36-201ENST00000420302 549 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 MTCO2P1-201ENST00000424648 477 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 ARF4P2-201ENST00000430209 526 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 CKS1BP5-201ENST00000434172 273 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 SNORA71B-202ENST00000439232 272 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 RAB11AP1-201ENST00000442978 646 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AL359073.1-201ENST00000448036 403 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC146507.1-201ENST00000468335 354 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 TRAV31-201ENST00000502780 342 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC021146.1-201ENST00000511202 716 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 SNORA26.10-201ENST00000516427 141 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 RNU6-334P-201ENST00000517072 102 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 SOD1P3-201ENST00000518682 454 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 HMGB1P1-201ENST00000522557 636 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC113192.3-201ENST00000529152 742 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS35Q96QK1 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC079684.1-201ENST00000621405 437 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 AC092628.2-201ENST00000622492 339 ntBASIC3.74□□□□□ -1.81
VPS35Q96QK1 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS35Q96QK1 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS35Q96QK1 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS35Q96QK1 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS35Q96QK1 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 RNA5SP424-201ENST00000390988 115 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS35Q96QK1 RPL30P2-201ENST00000414021 291 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC241520.1-201ENST00000422654 1099 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 HIGD1AP12-201ENST00000427832 281 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 RPL36P19-201ENST00000430744 301 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AL158053.1-201ENST00000441503 453 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 NOTCH2P1-201ENST00000443481 624 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS35Q96QK1 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 RPS15AP1-201ENST00000457423 391 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 TMEM248P1-201ENST00000510579 951 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC093755.1-201ENST00000512950 1023 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 MTND4LP31-201ENST00000514859 294 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 HIGD1AP3-201ENST00000515857 278 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 MTCYBP28-201ENST00000566728 1132 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 MIR4504-201ENST00000577413 92 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 YWHAQP7-201ENST00000603536 658 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AL049634.3-201ENST00000604968 457 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 RPL21P136-201ENST00000605378 396 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 RNU1-30P-201ENST00000606575 163 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC112503.1-201ENST00000608436 391 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC008121.2-201ENST00000614647 523 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC121761.2-201ENST00000617300 689 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 AC004943.3-201ENST00000624116 600 ntBASIC3.73□□□□□ -1.81
VPS35Q96QK1 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
VPS35Q96QK1 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms