Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RN7SKP183-201ENST00000517169 324 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC007494.1-201ENST00000562293 760 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC008162.1-201ENST00000604718 254 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC113139.1-201ENST00000605049 239 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL670379.4-201ENST00000605279 254 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC092807.2-201ENST00000609367 243 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 uc_338.15-201ENST00000615470 191 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL450472.3-201ENST00000615578 367 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 uc_338.11-201ENST00000619132 160 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL353662.3-201ENST00000625131 237 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC068769.1-201ENST00000474767 2426 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL672167.1-205ENST00000641112 3080 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 MTCO1P24-201ENST00000515438 1558 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC005725.1-201ENST00000577346 2607 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RNA5SP375-201ENST00000362975 119 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RNU6-1252P-201ENST00000363054 104 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RNA5SP223-201ENST00000365174 120 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RAB28P1-201ENST00000411517 641 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 Z93019.1-201ENST00000416450 973 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RPL7P46-201ENST00000425129 740 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 SAR1AP4-201ENST00000429225 591 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC108479.1-201ENST00000431142 427 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RPL36AP6-201ENST00000435770 321 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 MTCO3P45-201ENST00000443036 613 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RN7SL432P-201ENST00000484057 298 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AL035690.1-201ENST00000490892 383 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AP002453.1-201ENST00000492327 668 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 RNA5SP92-201ENST00000516437 110 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 Y_RNA.691-201ENST00000516611 103 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AP001284.1-201ENST00000528393 2118 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AP000763.2-201ENST00000540641 163 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 MIR4701-201ENST00000583094 63 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 MIR132-201ENST00000591554 101 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 SMIM12P1-201ENST00000603004 274 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 uc_338.31-201ENST00000615595 186 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC099669.2-201ENST00000616549 437 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AL162377.2-201ENST00000624532 337 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC073488.6-201ENST00000632293 754 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC111152.1-202ENST00000635848 339 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 AC125336.1-201ENST00000508893 2827 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 ZNF402P-201ENST00000404435 3100 ntBASIC4.74□□□□□ -1.65
CCDC140Q96MF4 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC140Q96MF4 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms