Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 Z93242.1-201ENST00000427102 353 ntBASIC3.84□□□□□ -1.8
BRCA1P38398 IFNNP1-201ENST00000429219 553 ntBASIC3.84□□□□□ -1.8
BRCA1P38398 BTG3P1-201ENST00000435859 716 ntBASIC3.84□□□□□ -1.8
BRCA1P38398 AC117440.1-201ENST00000474107 571 ntBASIC3.84□□□□□ -1.8
BRCA1P38398 RNU6-237P-201ENST00000515985 71 ntBASIC3.84□□□□□ -1.8
BRCA1P38398 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.84□□□□□ -1.8
BRCA1P38398 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.84□□□□□ -1.8
BRCA1P38398 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.84□□□□□ -1.8
BRCA1P38398 FAM60CP-201ENST00000591086 664 ntBASIC3.84□□□□□ -1.8
BRCA1P38398 AC084373.1-201ENST00000603311 235 ntBASIC3.84□□□□□ -1.8
BRCA1P38398 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
BRCA1P38398 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
BRCA1P38398 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
BRCA1P38398 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
BRCA1P38398 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
BRCA1P38398 GCNT6-201ENST00000379591 934 ntBASIC3.83□□□□□ -1.8
BRCA1P38398 RNU6-178P-201ENST00000384631 104 ntBASIC3.83□□□□□ -1.8
BRCA1P38398 AL445529.1-201ENST00000398713 389 ntBASIC3.83□□□□□ -1.8
BRCA1P38398 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
BRCA1P38398 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
BRCA1P38398 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
BRCA1P38398 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.83□□□□□ -1.8
BRCA1P38398 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
BRCA1P38398 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
BRCA1P38398 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.82□□□□□ -1.8
BRCA1P38398 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
BRCA1P38398 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC3.82□□□□□ -1.8
BRCA1P38398 RNU6-146P-201ENST00000384602 108 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 RSL24D1P4-201ENST00000400938 484 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AL356057.1-202ENST00000402263 756 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 HSPE1P8-201ENST00000406997 288 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AL356968.1-201ENST00000416622 474 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.82□□□□□ -1.8
BRCA1P38398 RPS26P47-201ENST00000427219 348 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AC113430.1-201ENST00000506872 718 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 SETP12-201ENST00000514068 805 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 RN7SKP116-201ENST00000516902 319 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.82□□□□□ -1.8
BRCA1P38398 AC106785.3-201ENST00000564064 847 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AC009948.4-201ENST00000604692 675 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AC023813.4-201ENST00000607580 580 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AC107905.1-201ENST00000616204 426 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC3.82□□□□□ -1.8
BRCA1P38398 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC3.82□□□□□ -1.8
BRCA1P38398 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
BRCA1P38398 AL022322.2-201ENST00000624072 20397 ntBASIC3.82□□□□□ -1.8
BRCA1P38398 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
BRCA1P38398 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
BRCA1P38398 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
BRCA1P38398 RN7SKP247-201ENST00000411094 308 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AL592148.1-201ENST00000413568 445 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.81□□□□□ -1.8
BRCA1P38398 ELOCP10-201ENST00000440624 327 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.81□□□□□ -1.8
BRCA1P38398 AC069277.2-201ENST00000454211 432 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
BRCA1P38398 RPS4XP22-201ENST00000480755 780 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC034244.2-201ENST00000514668 858 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC024153.1-201ENST00000603103 365 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 ELOCP34-201ENST00000604436 327 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC087241.4-201ENST00000612441 480 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.81□□□□□ -1.8
BRCA1P38398 AC000403.1-201ENST00000613696 3585 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
BRCA1P38398 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
BRCA1P38398 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
BRCA1P38398 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
BRCA1P38398 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
BRCA1P38398 AL022311.1-201ENST00000623726 19416 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.81□□□□□ -1.8
BRCA1P38398 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
BRCA1P38398 RNU6-859P-201ENST00000362728 107 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 RNU6-819P-201ENST00000364116 107 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
BRCA1P38398 NCSTNP1-201ENST00000406229 144 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 RN7SKP56-201ENST00000410513 331 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 RNA5SP293-201ENST00000410527 113 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.81□□□□□ -1.8
BRCA1P38398 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.81□□□□□ -1.8
BRCA1P38398 AC002075.2-201ENST00000425207 252 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 TXNP1-201ENST00000441872 371 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.81□□□□□ -1.8
BRCA1P38398 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.81□□□□□ -1.8
BRCA1P38398 AC008264.1-201ENST00000447612 367 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC099560.2-201ENST00000457554 255 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.81□□□□□ -1.8
BRCA1P38398 OR4C2P-201ENST00000530855 1064 ntBASIC3.81□□□□□ -1.8
BRCA1P38398 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.81□□□□□ -1.8
BRCA1P38398 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.81□□□□□ -1.8
BRCA1P38398 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.81□□□□□ -1.8
BRCA1P38398 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.81□□□□□ -1.8
BRCA1P38398 RPL23AP61-201ENST00000623642 466 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms