Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MTND4P18-201ENST00000447010 465 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC004980.3-201ENST00000447046 365 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 PDSS1P2-201ENST00000449397 678 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC239809.1-201ENST00000450470 217 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD3P31249 BTF3P5-201ENST00000457252 467 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 KLF3P2-201ENST00000465138 268 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC063943.1-201ENST00000465434 453 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 RN7SL354P-201ENST00000469282 294 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 RPS15AP17-201ENST00000470598 390 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 RPL30P11-201ENST00000495304 339 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AL358832.1-201ENST00000497800 389 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC114981.1-201ENST00000503897 678 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD3P31249 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD3P31249 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 AC016559.2-201ENST00000510759 359 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC018797.3-201ENST00000513388 1241 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD3P31249 RN7SKP298-201ENST00000515950 94 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 OR5M7P-201ENST00000526140 972 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 RGS5-219ENST00000528019 512 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD3P31249 OR4A12P-201ENST00000530847 918 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 PDCD5P1-201ENST00000543528 309 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD3P31249 AC068993.1-201ENST00000546724 589 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD3P31249 ZNF519P3-201ENST00000557158 1032 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD3P31249 AC084757.1-201ENST00000559987 490 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD3P31249 AP001180.3-201ENST00000582221 145 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 MIR4637-201ENST00000582405 84 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 MIR4697-201ENST00000582977 78 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 AF250324.2-201ENST00000608299 610 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 AC022306.2-201ENST00000617563 647 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD3P31249 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC3.89□□□□□ -1.79
HOXD3P31249 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 MTND5P26-201ENST00000426018 1752 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD3P31249 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 A2MP1-204ENST00000566278 4130 ntBASIC3.89□□□□□ -1.79
HOXD3P31249 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD3P31249 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 AC063976.2-201ENST00000425667 3556 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXD3P31249 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 LCMT1-AS2-202ENST00000565214 5666 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXD3P31249 RNA5SP428-201ENST00000365129 132 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 RPS3AP23-201ENST00000401762 784 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 ZNF603P-201ENST00000405613 487 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 MIR320C1-201ENST00000408566 88 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 RNU6-248P-201ENST00000410720 107 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 USP9YP13-201ENST00000417797 480 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AIMP1P1-201ENST00000418670 937 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 IPMKP1-201ENST00000425988 855 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AL031736.2-201ENST00000426573 787 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 C4BPAP2-201ENST00000428434 478 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 BX323845.1-201ENST00000432417 179 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 AC091862.1-201ENST00000438016 1100 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 RPL5P25-201ENST00000441148 775 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 MTND5P14-201ENST00000441481 1267 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 OR7E125P-201ENST00000443450 846 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXD3P31249 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXD3P31249 IFNWP4-201ENST00000453148 294 ntBASIC3.88□□□□□ -1.79
HOXD3P31249 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXD3P31249 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXD3P31249 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms