Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
HOXA3O43365 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXA3O43365 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC4.52□□□□□ -1.69
HOXA3O43365 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
HOXA3O43365 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXA3O43365 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXA3O43365 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 Y_RNA.72-201ENST00000362894 103 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 RNY4P16-201ENST00000364768 94 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 SNORA69-201ENST00000383895 132 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 RNU6-767P-201ENST00000384132 107 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 MIR223-201ENST00000385204 110 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 RNU2-50P-201ENST00000410494 143 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 UQCRBP1-201ENST00000421129 336 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.51□□□□□ -1.69
HOXA3O43365 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.51□□□□□ -1.69
HOXA3O43365 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA3O43365 RPS20P24-201ENST00000457473 361 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 RPL23AP72-201ENST00000492447 435 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 NDUFA5P12-201ENST00000503796 343 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 RNU6-1220P-201ENST00000517126 108 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 PHBP17-201ENST00000528576 541 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 BRD9P1-201ENST00000529855 560 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 OR5AL2P-201ENST00000532185 920 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 OR8L1P-201ENST00000534005 955 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC024224.1-201ENST00000538284 609 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.51□□□□□ -1.69
HOXA3O43365 AL049779.2-201ENST00000553847 315 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC090615.1-201ENST00000577519 154 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
HOXA3O43365 AC012616.1-201ENST00000600294 197 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 AC079776.5-201ENST00000641920 211 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 AC109446.4-201ENST00000623235 2755 ntBASIC4.51□□□□□ -1.69
HOXA3O43365 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA3O43365 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA3O43365 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA3O43365 AL360270.2-201ENST00000562952 5985 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC022164.1-201ENST00000568767 2673 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 ZNF680P1-201ENST00000436625 1469 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 MFSD8-239ENST00000641590 2479 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 AC108467.2-201ENST00000617640 1597 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 SNORA58B-201ENST00000364259 136 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
HOXA3O43365 RNU1-74P-201ENST00000384108 171 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXA3O43365 RNU6-1158P-201ENST00000391167 107 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA3O43365 Z97832.1-201ENST00000402490 328 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 RNU6-603P-201ENST00000411403 107 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXA3O43365 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 AL807761.1-201ENST00000417622 171 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 RPS15AP12-201ENST00000419498 388 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 ELOCP4-201ENST00000420090 333 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA3O43365 PTMAP6-201ENST00000439110 327 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 RPS15AP9-201ENST00000439856 381 ntBASIC4.5□□□□□ -1.69
HOXA3O43365 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA3O43365 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms