Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-1Q99801 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-1Q99801 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-1Q99801 RNA5SP447-201ENST00000363749 119 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 SNORA62-201ENST00000365493 153 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 RNU6-1279P-201ENST00000383917 103 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 SNORA70F-201ENST00000384142 135 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 RAB28P1-201ENST00000411517 641 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 MTND4P22-201ENST00000413116 1169 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 HIGD1AP4-201ENST00000430194 280 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC011998.1-201ENST00000433403 117 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 RPL23AP52-201ENST00000439311 478 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 RPL12P26-201ENST00000452430 487 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 RPL21P134-201ENST00000453468 483 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 MTCO2P6-201ENST00000463134 685 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 RPL5P24-201ENST00000463742 885 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC010307.1-201ENST00000467206 836 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC104164.2-201ENST00000496953 495 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 RNU5A-4P-201ENST00000516588 111 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 OR5M7P-201ENST00000526140 972 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC069240.1-201ENST00000548774 375 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC010198.2-201ENST00000550612 259 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC022069.1-201ENST00000582910 658 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC131235.4-201ENST00000609288 620 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AL021997.2-201ENST00000615674 271 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AP000484.1-201ENST00000620067 1252 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AL445363.3-201ENST00000623080 671 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 AC116618.1-201ENST00000634617 774 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-1Q99801 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
NKX3-1Q99801 RAD17P1-201ENST00000418130 2042 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 AL592148.3-201ENST00000608771 2646 ntBASIC3.68□□□□□ -1.82
NKX3-1Q99801 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
NKX3-1Q99801 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 PNPT1P2-201ENST00000456768 2050 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 MTND5P31-201ENST00000419366 1374 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 RNU6-251P-201ENST00000363235 104 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 SUGT1P1-201ENST00000379514 476 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 RNU6-657P-201ENST00000383904 107 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 RNU6-441P-201ENST00000384545 106 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 RAC1P3-201ENST00000416129 580 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 RBMY1KP-201ENST00000423480 476 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 RPL18P10-201ENST00000425606 538 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 RPL23AP1-201ENST00000428990 471 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 RPL7P34-201ENST00000433316 712 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AL132765.1-201ENST00000434165 553 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AL133477.1-201ENST00000457472 514 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 PNPLA4P1-201ENST00000458328 305 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC025445.1-201ENST00000502728 300 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC104090.1-201ENST00000506341 1171 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 PARP4P3-201ENST00000510265 317 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC018797.3-201ENST00000513388 1241 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 MTATP6P15-201ENST00000527233 835 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 PDCL2P2-201ENST00000533651 189 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 HIGD1AP17-201ENST00000554576 276 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC009094.1-201ENST00000564443 426 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 MIR5096-201ENST00000583713 70 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms