Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SKA3Q8IX90 MIR4286-201ENST00000580651 93 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC053481.4-201ENST00000583164 216 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC006116.7-201ENST00000590141 756 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC133794.1-201ENST00000602731 914 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC091488.1-201ENST00000604239 660 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AL392112.1-201ENST00000605115 829 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC010680.4-201ENST00000605334 543 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC012531.5-201ENST00000611375 151 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC007275.1-201ENST00000621243 671 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 RNU6-156P-201ENST00000621869 107 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC004943.3-201ENST00000624116 600 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC006927.2-201ENST00000639256 389 ntBASIC3.4□□□□□ -1.87
SKA3Q8IX90 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SKA3Q8IX90 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SKA3Q8IX90 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SKA3Q8IX90 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC138393.1-206ENST00000540997 1886 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SKA3Q8IX90 RNA5SP515-201ENST00000364570 118 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC234772.1-201ENST00000377927 937 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AL590704.1-201ENST00000402856 794 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC092832.1-201ENST00000422934 400 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC013262.1-201ENST00000426710 252 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SKA3Q8IX90 USP9YP31-201ENST00000431405 881 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 SEPT14P24-201ENST00000447236 180 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 RPL23AP62-201ENST00000463396 453 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AP000893.1-201ENST00000474462 794 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC126121.1-201ENST00000482313 553 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SKA3Q8IX90 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AP003066.2-201ENST00000529375 555 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC087894.1-201ENST00000538359 518 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC010735.1-201ENST00000567305 1026 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 MIR3160-1-201ENST00000577972 85 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC011492.1-201ENST00000600023 315 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC068620.3-201ENST00000602749 560 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC099785.1-201ENST00000605697 437 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AC099669.2-201ENST00000616549 437 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 AP003476.1-201ENST00000623984 516 ntBASIC3.39□□□□□ -1.87
SKA3Q8IX90 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SKA3Q8IX90 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SKA3Q8IX90 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL512646.1-201ENST00000269395 1077 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 RNU5B-1-201ENST00000363286 116 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 RNU5B-4P-201ENST00000363508 111 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 MIR199A2-201ENST00000385289 110 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 RNU6-1176P-201ENST00000390955 107 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 RN7SKP263-201ENST00000411194 309 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 TAF13P2-201ENST00000416876 286 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 Z74696.2-201ENST00000436514 498 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AL645931.1-201ENST00000439737 410 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 RPL23AP15-201ENST00000450202 459 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 CDC42P1-201ENST00000456658 548 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 RNU7-140P-201ENST00000459546 60 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 VN1R105P-201ENST00000486595 910 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC093267.1-201ENST00000489176 961 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC012170.1-201ENST00000495139 359 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 TRAV31-201ENST00000502780 342 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 MTND3P3-201ENST00000505004 126 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 OR5H4P-201ENST00000510851 923 ntBASIC3.38□□□□□ -1.87
SKA3Q8IX90 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.38□□□□□ -1.87
SKA3Q8IX90 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms