Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AL512633.1-201ENST00000399931 655 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 GSTA8P-201ENST00000404253 637 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 RNU2-25P-201ENST00000411041 191 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC011933.1-201ENST00000413334 321 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 VN1R31P-201ENST00000417498 730 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 CNOT7P1-201ENST00000429006 852 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 ATP5C1P1-201ENST00000441945 895 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC116533.1-201ENST00000459748 321 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC146507.1-201ENST00000468335 354 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 RPS3AP43-201ENST00000479743 781 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 HIGD1AP14-201ENST00000507617 282 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 RN7SKP234-201ENST00000517173 224 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 PAICSP4-201ENST00000517543 1253 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 IGKV3D-34-201ENST00000522638 302 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC087373.1-201ENST00000524920 491 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 REXO2-218ENST00000544827 880 ntTSL 3 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC128657.1-201ENST00000549459 145 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 PRELID2P1-201ENST00000552837 301 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 OR4U1P-201ENST00000554958 912 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 MIR3605-201ENST00000583214 100 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 RNU1-30P-201ENST00000606575 163 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AL121612.2-201ENST00000612261 482 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 MIR6895-201ENST00000613497 78 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC087385.3-201ENST00000620477 187 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 AC244100.1-202ENST00000621554 382 ntBASIC1.84□□□□□ -2.11
LINC00643Q86TS7 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
LINC00643Q86TS7 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC1.84□□□□□ -2.12
LINC00643Q86TS7 GABRG2-229ENST00000641017 3628 ntBASIC1.84□□□□□ -2.12
LINC00643Q86TS7 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 MIR383-201ENST00000362257 73 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 IARS-201ENST00000375627 697 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 USP9YP27-201ENST00000418455 438 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RPEP3-201ENST00000425462 676 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AL591419.1-201ENST00000427423 339 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC073508.1-201ENST00000428866 656 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RPL23AP74-201ENST00000437246 471 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 CACYBPP1-201ENST00000438592 684 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RPL31P44-201ENST00000447680 377 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AL445669.2-201ENST00000454425 421 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RPS27P27-201ENST00000498779 255 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 VN1R104P-201ENST00000505115 1009 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 MTCO2P32-201ENST00000514865 403 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RNU1-61P-201ENST00000516107 151 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RNU1-104P-201ENST00000517280 175 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC007115.1-201ENST00000546853 234 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 DNAJC8P1-201ENST00000554535 372 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 ACYP1-204ENST00000555135 639 ntTSL 3 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 MIR4436B2-201ENST00000581415 91 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 ZNF415P1-201ENST00000582279 1166 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 NPM1P45-201ENST00000583151 559 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 MIR4436B1-201ENST00000583272 91 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 MIR5187-201ENST00000583479 76 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC104785.1-201ENST00000603220 588 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RPL23AP92-201ENST00000603609 255 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AL645944.1-201ENST00000603857 493 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AL133507.1-201ENST00000605269 557 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AP004607.9-201ENST00000618202 316 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AP003122.6-201ENST00000623831 495 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 MTCO1P24-201ENST00000515438 1558 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AL645937.1-201ENST00000641739 1652 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 AC116096.1-201ENST00000566804 2314 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
LINC00643Q86TS7 DDX6P1-205ENST00000441966 1436 ntBASIC1.83□□□□□ -2.12
LINC00643Q86TS7 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC1.82□□□□□ -2.12
LINC00643Q86TS7 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms