Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 ZNF680P1-201ENST00000436625 1469 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC112198.2-201ENST00000426589 6996 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RNU6-451P-201ENST00000362921 107 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RNU4-73P-201ENST00000363164 141 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RNA5SP391-201ENST00000363456 119 ntBASIC5.8□□□□□ -1.48
LIG3P49916 Y_RNA.142-201ENST00000363491 102 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC092642.1-201ENST00000392417 425 ntBASIC5.8□□□□□ -1.48
LIG3P49916 HMGB1P20-201ENST00000402555 677 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RNA5SP178-201ENST00000410380 128 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC069218.2-201ENST00000411665 344 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC5.8□□□□□ -1.48
LIG3P49916 RPS20P15-201ENST00000412792 311 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RPL6P29-201ENST00000414863 865 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC073136.2-201ENST00000417282 849 ntBASIC5.8□□□□□ -1.48
LIG3P49916 SDCBPP3-201ENST00000419629 891 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC093155.2-201ENST00000420734 937 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.8□□□□□ -1.48
LIG3P49916 SUMO2P3-201ENST00000438311 288 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AL391987.1-201ENST00000441025 200 ntBASIC5.8□□□□□ -1.48
LIG3P49916 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC5.8□□□□□ -1.48
LIG3P49916 RNU1-88P-201ENST00000459274 128 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RPS20P20-201ENST00000460498 340 ntBASIC5.8□□□□□ -1.48
LIG3P49916 APOOP2-201ENST00000461561 539 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RN7SL273P-201ENST00000481561 299 ntBASIC5.8□□□□□ -1.48
LIG3P49916 RPL39P36-201ENST00000490784 156 ntBASIC5.8□□□□□ -1.48
LIG3P49916 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.8□□□□□ -1.48
LIG3P49916 PANCR-202ENST00000513690 448 ntTSL 2 BASIC5.8□□□□□ -1.48
LIG3P49916 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.8□□□□□ -1.48
LIG3P49916 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.8□□□□□ -1.48
LIG3P49916 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 ARL2BPP2-201ENST00000550907 489 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.8□□□□□ -1.48
LIG3P49916 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.8□□□□□ -1.48
LIG3P49916 MIR3167-201ENST00000579623 85 ntBASIC5.8□□□□□ -1.48
LIG3P49916 MIR3118-1-201ENST00000581787 76 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AC011712.1-201ENST00000588959 234 ntBASIC5.8□□□□□ -1.48
LIG3P49916 AL136363.1-201ENST00000605349 337 ntBASIC5.8□□□□□ -1.48
LIG3P49916 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.8□□□□□ -1.48
LIG3P49916 RN7SL787P-201ENST00000613000 284 ntBASIC5.8□□□□□ -1.48
LIG3P49916 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 AC112487.2-201ENST00000637950 304 ntBASIC5.8□□□□□ -1.48
LIG3P49916 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.8□□□□□ -1.48
LIG3P49916 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
LIG3P49916 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.8□□□□□ -1.48
LIG3P49916 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 MTND5P28-201ENST00000438005 1594 ntBASIC5.8□□□□□ -1.48
LIG3P49916 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
LIG3P49916 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
LIG3P49916 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.79□□□□□ -1.48
LIG3P49916 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
LIG3P49916 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
LIG3P49916 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.79□□□□□ -1.48
LIG3P49916 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.79□□□□□ -1.48
LIG3P49916 AP004607.3-201ENST00000530354 3915 ntBASIC5.79□□□□□ -1.48
LIG3P49916 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 RNU6-1120P-201ENST00000362988 108 ntBASIC5.79□□□□□ -1.48
LIG3P49916 RNY1P12-201ENST00000364251 105 ntBASIC5.79□□□□□ -1.48
LIG3P49916 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.79□□□□□ -1.48
LIG3P49916 OR9R1P-201ENST00000412200 877 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.79□□□□□ -1.48
LIG3P49916 EIF1P3-201ENST00000423841 334 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
LIG3P49916 OR52B5P-201ENST00000435337 951 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AL118496.2-201ENST00000448300 230 ntBASIC5.79□□□□□ -1.48
LIG3P49916 RNU6-261P-201ENST00000459506 102 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC022215.1-201ENST00000481770 362 ntBASIC5.79□□□□□ -1.48
LIG3P49916 RPL23AP41-201ENST00000484754 458 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.79□□□□□ -1.48
LIG3P49916 AC093677.1-201ENST00000514414 678 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC104057.1-201ENST00000515547 497 ntBASIC5.79□□□□□ -1.48
LIG3P49916 Y_RNA.675-201ENST00000516389 149 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.79□□□□□ -1.48
LIG3P49916 AC139365.2-201ENST00000517972 253 ntBASIC5.79□□□□□ -1.48
LIG3P49916 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.79□□□□□ -1.48
LIG3P49916 AP000859.1-201ENST00000525536 307 ntBASIC5.79□□□□□ -1.48
LIG3P49916 PHBP17-201ENST00000528576 541 ntBASIC5.79□□□□□ -1.48
LIG3P49916 BRD9P1-201ENST00000529855 560 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AL109766.1-201ENST00000555080 552 ntBASIC5.79□□□□□ -1.48
LIG3P49916 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.79□□□□□ -1.48
LIG3P49916 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.79□□□□□ -1.48
LIG3P49916 AL356432.3-201ENST00000568952 465 ntBASIC5.79□□□□□ -1.48
LIG3P49916 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
LIG3P49916 AC015917.1-201ENST00000579654 510 ntBASIC5.79□□□□□ -1.48
LIG3P49916 MIR3936-201ENST00000584304 110 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms