Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG1P18858 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 AC022916.3-201ENST00000592961 742 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG1P18858 AC104785.1-201ENST00000603220 588 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AL391646.1-201ENST00000603860 190 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AP000942.4-201ENST00000604811 241 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 MIR6886-201ENST00000619864 61 ntBASIC6.13□□□□□ -1.43
LIG1P18858 MIR6839-201ENST00000620425 113 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
LIG1P18858 AC006504.8-201ENST00000621046 635 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC091905.1-201ENST00000624400 311 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG1P18858 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
LIG1P18858 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG1P18858 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG1P18858 AC005332.5-201ENST00000591222 2919 ntBASIC6.13□□□□□ -1.43
LIG1P18858 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG1P18858 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG1P18858 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG1P18858 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 RNU4-79P-201ENST00000362764 141 ntBASIC6.12□□□□□ -1.43
LIG1P18858 SNORA48.4-201ENST00000391089 134 ntBASIC6.12□□□□□ -1.43
LIG1P18858 RNU6-332P-201ENST00000391193 108 ntBASIC6.12□□□□□ -1.43
LIG1P18858 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 MIR1305-201ENST00000408300 86 ntBASIC6.12□□□□□ -1.43
LIG1P18858 RN7SKP16-201ENST00000410180 299 ntBASIC6.12□□□□□ -1.43
LIG1P18858 RN7SKP247-201ENST00000411094 308 ntBASIC6.12□□□□□ -1.43
LIG1P18858 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 AL354751.2-201ENST00000415471 210 ntBASIC6.12□□□□□ -1.43
LIG1P18858 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 RBMY2KP-201ENST00000418221 992 ntBASIC6.12□□□□□ -1.43
LIG1P18858 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 NANOGP6-201ENST00000429190 847 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 NOP56P2-201ENST00000447491 769 ntBASIC6.12□□□□□ -1.43
LIG1P18858 RPL23AP20-201ENST00000447965 421 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC132479.1-201ENST00000449160 144 ntBASIC6.12□□□□□ -1.43
LIG1P18858 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG1P18858 AC099563.1-201ENST00000456086 418 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC100832.1-201ENST00000471945 383 ntBASIC6.12□□□□□ -1.43
LIG1P18858 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 RN7SL547P-201ENST00000490793 290 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 NIFKP7-201ENST00000503365 834 ntBASIC6.12□□□□□ -1.43
LIG1P18858 ENPP7P11-201ENST00000505915 627 ntBASIC6.12□□□□□ -1.43
LIG1P18858 DDX18P4-201ENST00000511690 1966 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC108471.1-201ENST00000513977 287 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 IGLVVI-25-1-201ENST00000521893 249 ntBASIC6.12□□□□□ -1.43
LIG1P18858 HSPA8P13-201ENST00000523715 472 ntBASIC6.12□□□□□ -1.43
LIG1P18858 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 LSM3P2-201ENST00000551246 273 ntBASIC6.12□□□□□ -1.43
LIG1P18858 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AL845331.3-202ENST00000562856 261 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC6.12□□□□□ -1.43
LIG1P18858 AC114947.2-201ENST00000565748 2125 ntBASIC6.12□□□□□ -1.43
LIG1P18858 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.12□□□□□ -1.43
LIG1P18858 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 MIR4489-201ENST00000578869 62 ntBASIC6.12□□□□□ -1.43
LIG1P18858 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC6.12□□□□□ -1.43
LIG1P18858 AL162413.1-201ENST00000603198 110 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AL359999.1-201ENST00000604513 294 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AL162730.1-201ENST00000605734 292 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AL050343.2-201ENST00000607338 280 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC104118.1-201ENST00000607625 1589 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG1P18858 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.12□□□□□ -1.43
LIG1P18858 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG1P18858 AC139792.3-201ENST00000623525 224 ntBASIC6.12□□□□□ -1.43
LIG1P18858 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG1P18858 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG1P18858 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
LIG1P18858 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC6.12□□□□□ -1.43
LIG1P18858 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
LIG1P18858 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
LIG1P18858 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
LIG1P18858 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
LIG1P18858 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
LIG1P18858 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
LIG1P18858 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms