Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC005412.1-201ENST00000580812 1049 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AP001160.4-201ENST00000596971 382 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL354984.3-201ENST00000604803 325 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL592436.1-201ENST00000605135 558 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 HSPE1P14-201ENST00000605812 302 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AL354976.1-201ENST00000613843 387 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 uc_338.13-201ENST00000618243 179 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC092650.2-201ENST00000619984 902 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 CR381572.1-201ENST00000625098 102 ntBASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ZNF540Q8NDQ6 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.78□□□□□ -1.81
ZNF540Q8NDQ6 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 CASC19-261ENST00000641853 1638 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 OR11H4-201ENST00000315409 1082 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 RPL7P26-201ENST00000333817 754 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AL589826.1-201ENST00000340697 249 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 RNU6-761P-201ENST00000384148 107 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 MIR649-201ENST00000384843 97 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC009237.5-201ENST00000414271 501 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 RPS7P15-201ENST00000415804 584 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AL139095.3-201ENST00000419672 1203 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 RPS26P30-201ENST00000443431 335 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 NUTF2P3-201ENST00000448540 384 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 HMGB1P15-201ENST00000453854 435 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 UQCRHP4-201ENST00000471686 272 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 BTF3L4P4-201ENST00000506381 449 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 MTND2P31-201ENST00000512602 616 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 SNORA31.9-201ENST00000516429 84 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 LSM6P2-201ENST00000552208 177 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC068831.4-201ENST00000556118 109 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC007224.1-201ENST00000564410 144 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC023824.3-201ENST00000569003 562 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AP001029.3-201ENST00000588063 596 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 ZNF92P2-201ENST00000600543 1059 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC114781.5-201ENST00000615297 108 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 AC008013.2-202ENST00000637965 364 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 IPO8P1-201ENST00000455509 3109 ntBASIC3.77□□□□□ -1.81
ZNF540Q8NDQ6 MTND4P10-201ENST00000446199 1363 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 RNU6-263P-201ENST00000363811 107 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 RNA5SP366-201ENST00000365454 123 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 RNU4-78P-201ENST00000410940 126 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 HMGB3P23-201ENST00000414981 585 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 TMSB10P2-201ENST00000416049 131 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 MRPS18BP2-201ENST00000434310 759 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC114755.5-201ENST00000447760 831 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 RPL7P55-201ENST00000450522 746 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 RPL23AP81-201ENST00000455252 467 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 DHFRP3-201ENST00000455595 559 ntBASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.76□□□□□ -1.81
ZNF540Q8NDQ6 snoU13.4-201ENST00000458916 104 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms