Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL009174.1-201ENST00000426577 416 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AL139415.2-201ENST00000431968 163 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 RPS12P18-201ENST00000442381 270 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 RPS24P13-201ENST00000442520 397 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC1.89□□□□□ -2.11
HSPG2P98160 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.89□□□□□ -2.11
HSPG2P98160 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC1.89□□□□□ -2.11
HSPG2P98160 AL158827.2-201ENST00000602494 330 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 PLCE1P1-201ENST00000622094 305 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AL691447.3-201ENST00000635020 330 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 AC138627.1-204ENST00000641894 765 ntBASIC1.89□□□□□ -2.11
HSPG2P98160 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HSPG2P98160 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 AL161781.1-201ENST00000354277 403 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 DUTP6-201ENST00000425573 462 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AC092447.2-201ENST00000435487 669 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 CST9LP2-201ENST00000437612 320 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC1.88□□□□□ -2.11
HSPG2P98160 AC078899.3-201ENST00000599065 212 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AC009948.4-201ENST00000604692 675 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 HDX-206ENST00000506585 6158 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 BCLAF1P1-201ENST00000505813 2752 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
HSPG2P98160 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
HSPG2P98160 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 Y_RNA.508-201ENST00000384502 114 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AL445528.1-201ENST00000426330 420 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AL591806.2-201ENST00000433122 173 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 UBE2D3P1-201ENST00000436669 444 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC1.88□□□□□ -2.11
HSPG2P98160 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 MTND2P25-201ENST00000449028 610 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 RPL31P13-201ENST00000484151 370 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 SERPINE4P-201ENST00000554978 281 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC1.88□□□□□ -2.11
HSPG2P98160 AC022509.4-201ENST00000621404 572 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 MAPK10-322ENST00000641485 4530 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 CEP170P1-201ENST00000502249 4587 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
HSPG2P98160 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
HSPG2P98160 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 RAD21-204ENST00000518055 896 ntTSL 2 BASIC1.88□□□□□ -2.11
HSPG2P98160 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 AC009977.1-201ENST00000586015 570 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC1.88□□□□□ -2.11
HSPG2P98160 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 AC112198.2-201ENST00000426589 6996 ntBASIC1.88□□□□□ -2.11
HSPG2P98160 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC1.88□□□□□ -2.11
HSPG2P98160 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
HSPG2P98160 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC1.88□□□□□ -2.11
HSPG2P98160 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
HSPG2P98160 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
HSPG2P98160 ATF1P1-201ENST00000406040 927 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 RN7SL93P-201ENST00000463035 293 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC1.87□□□□□ -2.11
HSPG2P98160 RNU4ATAC6P-201ENST00000516592 126 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 SNORA70.19-201ENST00000516717 90 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC1.87□□□□□ -2.11
HSPG2P98160 AL358913.1-201ENST00000554342 121 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC1.87□□□□□ -2.11
HSPG2P98160 PRELID3BP8-201ENST00000604148 295 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 AL354950.1-201ENST00000614150 568 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
HSPG2P98160 AC010300.1-201ENST00000600671 5134 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
HSPG2P98160 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
HSPG2P98160 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC1.87□□□□□ -2.11
HSPG2P98160 MIR7-2-201ENST00000384970 110 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 RPS4XP7-201ENST00000406274 780 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 RPS26P47-201ENST00000427219 348 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
HSPG2P98160 AC004057.1-201ENST00000485827 348 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 RNA5SP154-201ENST00000516193 111 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 COX6CP8-201ENST00000522620 226 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
HSPG2P98160 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC1.87□□□□□ -2.11
HSPG2P98160 AC107027.3-201ENST00000565095 3473 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 MIR9-1-201ENST00000385198 89 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 HDGFP1-201ENST00000405943 252 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 AL160275.2-201ENST00000412010 394 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 NANOGP6-201ENST00000429190 847 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 AC108210.2-201ENST00000503681 201 ntBASIC1.87□□□□□ -2.11
HSPG2P98160 AC008565.1-201ENST00000509046 885 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms