Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL158050.1-201ENST00000416077 457 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 AC234782.4-201ENST00000417646 1048 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 RPL17P35-201ENST00000432217 549 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.56□□□□□ -1.84
SHMT2P34897 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SHMT2P34897 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.56□□□□□ -1.84
SHMT2P34897 AC239367.2-201ENST00000447309 705 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 RAB9AP1-201ENST00000449393 573 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 RPL37P3-201ENST00000456825 293 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 CEACAMP4-201ENST00000457676 421 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 SNORA84-201ENST00000459229 133 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 AP002812.1-201ENST00000495378 474 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 TRAV31-201ENST00000502780 342 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.56□□□□□ -1.84
SHMT2P34897 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SHMT2P34897 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.56□□□□□ -1.84
SHMT2P34897 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.56□□□□□ -1.84
SHMT2P34897 RN7SKP18-201ENST00000516005 275 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.56□□□□□ -1.84
SHMT2P34897 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.56□□□□□ -1.84
SHMT2P34897 AC008489.1-201ENST00000524271 483 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 OSBPL9P3-201ENST00000534523 595 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SHMT2P34897 AC079148.1-201ENST00000565944 819 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 AC106734.1-201ENST00000568646 663 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 MIR4458-201ENST00000578872 75 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.56□□□□□ -1.84
SHMT2P34897 RMST_8.1-201ENST00000610287 165 ntBASIC3.56□□□□□ -1.84
SHMT2P34897 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC3.56□□□□□ -1.84
SHMT2P34897 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.56□□□□□ -1.84
SHMT2P34897 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SHMT2P34897 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.56□□□□□ -1.84
SHMT2P34897 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.55□□□□□ -1.84
SHMT2P34897 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
SHMT2P34897 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHMT2P34897 MTCO1P18-201ENST00000455518 1419 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.55□□□□□ -1.84
SHMT2P34897 PRO1804-201ENST00000623780 2050 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.55□□□□□ -1.84
SHMT2P34897 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHMT2P34897 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHMT2P34897 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.55□□□□□ -1.84
SHMT2P34897 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHMT2P34897 RNA5SP51-201ENST00000364750 119 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 SNORD3H-201ENST00000384486 214 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 RPL7P60-201ENST00000397636 735 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 RN7SKP27-201ENST00000410684 333 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.55□□□□□ -1.84
SHMT2P34897 AL159169.1-201ENST00000421119 127 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AL121882.1-201ENST00000422893 417 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AL031736.2-201ENST00000426573 787 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 ELOCP11-201ENST00000436690 332 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 ELOCP16-201ENST00000444494 332 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.55□□□□□ -1.84
SHMT2P34897 SNORD105B-201ENST00000458770 79 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHMT2P34897 TRBV8-2-201ENST00000475637 270 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.55□□□□□ -1.84
SHMT2P34897 AP001086.1-201ENST00000494882 321 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AL035404.1-201ENST00000497982 568 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.55□□□□□ -1.84
SHMT2P34897 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.55□□□□□ -1.84
SHMT2P34897 RANP9-201ENST00000519957 271 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.55□□□□□ -1.84
SHMT2P34897 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.55□□□□□ -1.84
SHMT2P34897 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
SHMT2P34897 AC008011.1-201ENST00000545989 227 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AC090751.1-201ENST00000566966 267 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 MIR3158-1-201ENST00000583596 81 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.55□□□□□ -1.84
SHMT2P34897 AC012254.4-201ENST00000588843 273 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.55□□□□□ -1.84
SHMT2P34897 AC244505.7-201ENST00000599675 272 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.55□□□□□ -1.84
SHMT2P34897 AC069304.3-201ENST00000603938 1084 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AC103710.3-201ENST00000608157 948 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.55□□□□□ -1.84
SHMT2P34897 AL592295.2-201ENST00000612578 206 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AC006133.1-201ENST00000617106 264 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 AL163051.2-201ENST00000618976 735 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.55□□□□□ -1.84
SHMT2P34897 AC012442.3-202ENST00000636742 206 ntBASIC3.55□□□□□ -1.84
SHMT2P34897 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SHMT2P34897 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SHMT2P34897 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 AL512283.1-201ENST00000606756 1384 ntBASIC3.54□□□□□ -1.84
SHMT2P34897 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.54□□□□□ -1.84
SHMT2P34897 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 RNU1-87P-201ENST00000363727 170 ntBASIC3.54□□□□□ -1.84
SHMT2P34897 RNU1-85P-201ENST00000364127 164 ntBASIC3.54□□□□□ -1.84
SHMT2P34897 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SHMT2P34897 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms