Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 ETS1-204ENST00000526145 3389 ntTSL 5 BASIC8.38□□□□□ -1.07
HOXD11P31277 RABGEF1-201ENST00000284957 3733 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HOXD11P31277 GRB10-204ENST00000398812 4705 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
HOXD11P31277 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC8.38□□□□□ -1.07
HOXD11P31277 CELF1-205ENST00000395292 2191 ntAPPRIS P4 TSL 1 (best) BASIC8.38□□□□□ -1.07
HOXD11P31277 NCAM1-222ENST00000615285 6045 ntTSL 5 BASIC8.38□□□□□ -1.07
HOXD11P31277 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 KALRN-201ENST00000240874 6537 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 KALRN-211ENST00000460856 6509 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 AP002364.1-201ENST00000623330 3386 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC8.37□□□□□ -1.07
HOXD11P31277 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 FIGNL1-214ENST00000617389 3259 ntAPPRIS P1 TSL 4 BASIC8.37□□□□□ -1.07
HOXD11P31277 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 PDHA1-202ENST00000379804 709 ntTSL 2 BASIC8.37□□□□□ -1.07
HOXD11P31277 RNVU1-7-201ENST00000383858 164 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 MIR191-201ENST00000384873 92 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 RN7SKP119-201ENST00000410753 273 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 AL136981.1-201ENST00000411450 549 ntTSL 4 BASIC8.37□□□□□ -1.07
HOXD11P31277 AC099670.2-201ENST00000435130 321 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 ANP32BP2-201ENST00000454525 545 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 RNU6ATAC28P-201ENST00000459249 118 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 RN7SL12P-201ENST00000473849 290 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC8.37□□□□□ -1.07
HOXD11P31277 RNU6-107P-201ENST00000516643 102 ntBASIC8.37□□□□□ -1.07
HOXD11P31277 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 AC048383.1-201ENST00000558226 527 ntTSL 4 BASIC8.37□□□□□ -1.07
HOXD11P31277 RBM4-213ENST00000578778 582 ntTSL 4 BASIC8.37□□□□□ -1.07
HOXD11P31277 NPL-212ENST00000614468 2376 ntTSL 5 BASIC8.37□□□□□ -1.07
HOXD11P31277 ZNF322-208ENST00000622479 4882 ntAPPRIS P1 TSL 4 BASIC8.37□□□□□ -1.07
HOXD11P31277 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
HOXD11P31277 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC8.37□□□□□ -1.07
HOXD11P31277 SRP19-204ENST00000505459 2841 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC8.37□□□□□ -1.07
HOXD11P31277 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC8.37□□□□□ -1.07
HOXD11P31277 PITRM1-AS1-201ENST00000430356 3998 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
HOXD11P31277 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
HOXD11P31277 HPS5-206ENST00000531848 2160 ntTSL 5 BASIC8.37□□□□□ -1.07
HOXD11P31277 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 FAM222B-201ENST00000341217 4033 ntTSL 5 BASIC8.36□□□□□ -1.07
HOXD11P31277 CAGE1-202ENST00000338150 2771 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
HOXD11P31277 ARMC3-204ENST00000409983 2779 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
HOXD11P31277 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 SELENOT-202ENST00000471696 3469 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 AL031118.1-201ENST00000607727 2955 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 RSPO2-203ENST00000517939 2487 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 TTC5-201ENST00000258821 4779 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 ABCB1-211ENST00000622132 4778 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 CLSTN2-AS1-201ENST00000513309 2693 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 RNU6-454P-201ENST00000364292 107 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 RNA5SP56-201ENST00000410277 118 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 AC007365.2-201ENST00000428806 458 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 GOT2P2-201ENST00000450663 1251 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC8.36□□□□□ -1.07
HOXD11P31277 AC011276.1-201ENST00000469688 323 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 RNA5SP367-201ENST00000516557 118 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC8.36□□□□□ -1.07
HOXD11P31277 AC051619.2-201ENST00000559063 397 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 AC069061.2-201ENST00000580686 480 ntTSL 3 BASIC8.36□□□□□ -1.07
HOXD11P31277 RPS11-202ENST00000594493 575 ntTSL 3 BASIC8.36□□□□□ -1.07
HOXD11P31277 RPS11-205ENST00000599561 430 ntTSL 5 BASIC8.36□□□□□ -1.07
HOXD11P31277 AL359091.2-201ENST00000609303 556 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC8.36□□□□□ -1.07
HOXD11P31277 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 AL353795.3-201ENST00000624351 5702 ntBASIC8.36□□□□□ -1.07
HOXD11P31277 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 ERG-201ENST00000288319 4919 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 MAP4-210ENST00000439356 2743 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
HOXD11P31277 PSG9-209ENST00000621109 2019 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
HOXD11P31277 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC8.36□□□□□ -1.07
HOXD11P31277 USP15-202ENST00000312635 2226 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
HOXD11P31277 CMSS1-201ENST00000421999 4330 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
HOXD11P31277 A1CF-201ENST00000282641 9350 ntAPPRIS ALT1 TSL 2 BASIC8.35□□□□□ -1.07
HOXD11P31277 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC8.35□□□□□ -1.07
HOXD11P31277 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC8.35□□□□□ -1.07
HOXD11P31277 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
HOXD11P31277 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC8.35□□□□□ -1.07
HOXD11P31277 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC8.35□□□□□ -1.07
HOXD11P31277 RSL1D1-204ENST00000571133 5483 ntAPPRIS P2 TSL 1 (best) BASIC8.35□□□□□ -1.07
HOXD11P31277 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC8.35□□□□□ -1.07
HOXD11P31277 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC8.35□□□□□ -1.07
HOXD11P31277 RNU6-1264P-201ENST00000383891 107 ntBASIC8.35□□□□□ -1.07
HOXD11P31277 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC8.35□□□□□ -1.07
HOXD11P31277 AC108039.2-201ENST00000440214 359 ntBASIC8.35□□□□□ -1.07
HOXD11P31277 GGT3P-203ENST00000445651 368 ntTSL 2 BASIC8.35□□□□□ -1.07
HOXD11P31277 AC016632.1-201ENST00000503994 196 ntBASIC8.35□□□□□ -1.07
HOXD11P31277 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC8.35□□□□□ -1.07
HOXD11P31277 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC8.35□□□□□ -1.07
HOXD11P31277 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC8.35□□□□□ -1.07
HOXD11P31277 AC073389.2-201ENST00000606726 571 ntTSL 4 BASIC8.35□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 183.2 ms