Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 Y_RNA.8-201ENST00000362353 102 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 RNU6-1329P-201ENST00000365664 107 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 MIR141-201ENST00000384975 95 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 RNA5SP474-201ENST00000391234 90 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 RNA5SP111-201ENST00000411386 101 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AL358176.3-201ENST00000420757 454 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC6.87□□□□□ -1.31
COL9A1P20849 AC009220.1-201ENST00000451614 275 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 RN7SL329P-201ENST00000467740 299 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AC098847.1-201ENST00000473094 348 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC6.87□□□□□ -1.31
COL9A1P20849 AC109925.1-201ENST00000478069 331 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AC074198.2-201ENST00000508153 258 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 NDUFB4P9-201ENST00000511646 388 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.87□□□□□ -1.31
COL9A1P20849 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.87□□□□□ -1.31
COL9A1P20849 AC023827.2-201ENST00000566880 1061 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC6.87□□□□□ -1.31
COL9A1P20849 ELOCP5-201ENST00000604924 333 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AC005344.1-201ENST00000613391 459 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 CR392039.4-201ENST00000624968 501 ntBASIC6.87□□□□□ -1.31
COL9A1P20849 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC6.87□□□□□ -1.31
COL9A1P20849 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
COL9A1P20849 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
COL9A1P20849 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.87□□□□□ -1.31
COL9A1P20849 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC6.87□□□□□ -1.31
COL9A1P20849 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC6.87□□□□□ -1.31
COL9A1P20849 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
COL9A1P20849 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
COL9A1P20849 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 AC011933.2-201ENST00000578539 2790 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
COL9A1P20849 LRRC4C-202ENST00000527150 3085 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 SNORD115-46-201ENST00000390982 71 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AC130360.1-201ENST00000425489 1117 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AC064862.4-201ENST00000442180 334 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AL136126.1-201ENST00000473603 402 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 RPL31P60-201ENST00000478450 367 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 RN7SL187P-201ENST00000495587 303 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AKIRIN2P1-201ENST00000505898 352 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AC104057.1-201ENST00000515547 497 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 ACA59.1-201ENST00000515966 143 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 RNU6-313P-201ENST00000516317 112 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AC022404.1-201ENST00000555320 273 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 TPRX1P1-201ENST00000557620 319 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.86□□□□□ -1.31
COL9A1P20849 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC6.86□□□□□ -1.31
COL9A1P20849 MIR1269B-201ENST00000580405 75 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 CTSLP2-201ENST00000580501 394 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.86□□□□□ -1.31
COL9A1P20849 AL022394.1-201ENST00000606979 292 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 MIR7854-201ENST00000620068 65 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 AP001784.1-201ENST00000624107 428 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.86□□□□□ -1.31
COL9A1P20849 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
COL9A1P20849 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.86□□□□□ -1.31
COL9A1P20849 AC005183.1-201ENST00000603687 1979 ntBASIC6.86□□□□□ -1.31
COL9A1P20849 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
COL9A1P20849 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.86□□□□□ -1.31
COL9A1P20849 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC6.85□□□□□ -1.31
COL9A1P20849 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
COL9A1P20849 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 AC116667.1-201ENST00000604855 2072 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 SMG1P5-202ENST00000529428 4219 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 SMG1P2-201ENST00000566127 4221 ntBASIC6.85□□□□□ -1.31
COL9A1P20849 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL9A1P20849 Y_RNA.48-201ENST00000362710 103 ntBASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms