Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
LIG1P18858 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
LIG1P18858 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
LIG1P18858 RNF6P1-201ENST00000444889 1784 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC090017.1-201ENST00000548612 1779 ntBASIC6.14□□□□□ -1.43
LIG1P18858 SNRPEP3-201ENST00000338402 276 ntBASIC6.14□□□□□ -1.43
LIG1P18858 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
LIG1P18858 Y_RNA.72-201ENST00000362894 103 ntBASIC6.14□□□□□ -1.43
LIG1P18858 RNU6-115P-201ENST00000364310 107 ntBASIC6.14□□□□□ -1.43
LIG1P18858 Y_RNA.481-201ENST00000384373 102 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AL590290.1-201ENST00000405336 380 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AL603766.1-201ENST00000407763 664 ntBASIC6.14□□□□□ -1.43
LIG1P18858 RN7SKP222-201ENST00000410651 315 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC211486.3-201ENST00000412694 621 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
LIG1P18858 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 SDCBPP2-201ENST00000424643 885 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AL035410.1-201ENST00000427409 427 ntBASIC6.14□□□□□ -1.43
LIG1P18858 KCTD9P3-201ENST00000434597 1169 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AL353597.2-202ENST00000434901 373 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 ARPC3P1-201ENST00000437218 533 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 SDCBPP1-201ENST00000440192 890 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC019185.1-201ENST00000442718 389 ntBASIC6.14□□□□□ -1.43
LIG1P18858 MTCO1P27-201ENST00000448269 226 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 RN7SL51P-201ENST00000468230 285 ntBASIC6.14□□□□□ -1.43
LIG1P18858 RN7SL184P-201ENST00000488308 297 ntBASIC6.14□□□□□ -1.43
LIG1P18858 RPL39P36-201ENST00000490784 156 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC106872.3-201ENST00000495104 446 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
LIG1P18858 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
LIG1P18858 RNU6-1281P-201ENST00000516223 105 ntBASIC6.14□□□□□ -1.43
LIG1P18858 RNU2-46P-201ENST00000517038 113 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC125612.1-201ENST00000547580 377 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC090751.1-201ENST00000566966 267 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 AC011840.5-201ENST00000582125 771 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AP001180.3-201ENST00000582221 145 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG1P18858 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
LIG1P18858 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG1P18858 AC123786.2-201ENST00000603459 275 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC012507.3-201ENST00000603556 477 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC020910.2-201ENST00000603635 610 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC245014.2-201ENST00000603689 287 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AL133338.2-201ENST00000604292 736 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC246785.4-201ENST00000605374 287 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC6.14□□□□□ -1.43
LIG1P18858 MIR6768-201ENST00000610734 72 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC132068.1-201ENST00000623805 459 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
LIG1P18858 SAMMSON-227ENST00000642114 1199 ntBASIC6.14□□□□□ -1.43
LIG1P18858 AL450345.1-202ENST00000605741 3881 ntBASIC6.14□□□□□ -1.43
LIG1P18858 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
LIG1P18858 AC092079.1-201ENST00000558620 1985 ntBASIC6.14□□□□□ -1.43
LIG1P18858 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.14□□□□□ -1.43
LIG1P18858 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC6.14□□□□□ -1.43
LIG1P18858 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG1P18858 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG1P18858 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
LIG1P18858 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG1P18858 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
LIG1P18858 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG1P18858 OR11H4-201ENST00000315409 1082 ntBASIC6.13□□□□□ -1.43
LIG1P18858 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
LIG1P18858 RNA5SP319-201ENST00000362768 119 ntBASIC6.13□□□□□ -1.43
LIG1P18858 RNU4-2-201ENST00000365668 141 ntBASIC6.13□□□□□ -1.43
LIG1P18858 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
LIG1P18858 GAPDHP42-201ENST00000406848 981 ntBASIC6.13□□□□□ -1.43
LIG1P18858 OR3A2-201ENST00000408891 1076 ntBASIC6.13□□□□□ -1.43
LIG1P18858 JKAMPP1-201ENST00000413804 919 ntBASIC6.13□□□□□ -1.43
LIG1P18858 RPL35AP24-201ENST00000413846 330 ntBASIC6.13□□□□□ -1.43
LIG1P18858 USP9YP9-201ENST00000429406 715 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC005534.2-201ENST00000431047 433 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 YWHAQP9-201ENST00000445891 512 ntBASIC6.13□□□□□ -1.43
LIG1P18858 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.13□□□□□ -1.43
LIG1P18858 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 Z82190.1-201ENST00000454534 490 ntBASIC6.13□□□□□ -1.43
LIG1P18858 MEMO1P3-201ENST00000459811 302 ntBASIC6.13□□□□□ -1.43
LIG1P18858 APOOP2-201ENST00000461561 539 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC021660.1-201ENST00000465006 554 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AP000797.2-201ENST00000475768 606 ntBASIC6.13□□□□□ -1.43
LIG1P18858 SIAH1P1-201ENST00000479411 923 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AL161747.1-201ENST00000480068 358 ntBASIC6.13□□□□□ -1.43
LIG1P18858 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG1P18858 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 AC100784.1-201ENST00000522790 310 ntBASIC6.13□□□□□ -1.43
LIG1P18858 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.13□□□□□ -1.43
LIG1P18858 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC6.13□□□□□ -1.43
LIG1P18858 AC068714.1-201ENST00000559623 800 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms