Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.08□□□□□ -1.92
VCANP13611 AP003117.2-201ENST00000606010 545 ntBASIC3.08□□□□□ -1.92
VCANP13611 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.07□□□□□ -1.92
VCANP13611 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.07□□□□□ -1.92
VCANP13611 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
VCANP13611 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.07□□□□□ -1.92
VCANP13611 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
VCANP13611 AL445528.1-201ENST00000426330 420 ntBASIC3.07□□□□□ -1.92
VCANP13611 ETF1P3-201ENST00000430422 1160 ntBASIC3.07□□□□□ -1.92
VCANP13611 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC3.07□□□□□ -1.92
VCANP13611 snoU13.18-201ENST00000459483 104 ntBASIC3.07□□□□□ -1.92
VCANP13611 AC021205.2-201ENST00000480069 347 ntBASIC3.07□□□□□ -1.92
VCANP13611 AC012123.2-201ENST00000485809 248 ntBASIC3.07□□□□□ -1.92
VCANP13611 AC092436.1-201ENST00000506450 503 ntBASIC3.07□□□□□ -1.92
VCANP13611 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.07□□□□□ -1.92
VCANP13611 CKS1BP1-201ENST00000555221 240 ntBASIC3.07□□□□□ -1.92
VCANP13611 AC007566.2-201ENST00000603642 413 ntBASIC3.07□□□□□ -1.92
VCANP13611 AL365400.2-201ENST00000605604 902 ntBASIC3.07□□□□□ -1.92
VCANP13611 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 RNVU1-3-201ENST00000364313 161 ntBASIC3.07□□□□□ -1.92
VCANP13611 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.07□□□□□ -1.92
VCANP13611 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.07□□□□□ -1.92
VCANP13611 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.07□□□□□ -1.92
VCANP13611 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.07□□□□□ -1.92
VCANP13611 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
VCANP13611 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC3.07□□□□□ -1.92
VCANP13611 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
VCANP13611 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.07□□□□□ -1.92
VCANP13611 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.06□□□□□ -1.92
VCANP13611 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC3.06□□□□□ -1.92
VCANP13611 B3GNT2P1-201ENST00000434960 952 ntBASIC3.06□□□□□ -1.92
VCANP13611 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.06□□□□□ -1.92
VCANP13611 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.06□□□□□ -1.92
VCANP13611 RPS4XP22-201ENST00000480755 780 ntBASIC3.06□□□□□ -1.92
VCANP13611 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.06□□□□□ -1.92
VCANP13611 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.06□□□□□ -1.92
VCANP13611 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.06□□□□□ -1.92
VCANP13611 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.06□□□□□ -1.92
VCANP13611 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC3.06□□□□□ -1.92
VCANP13611 PRELID3BP8-201ENST00000604148 295 ntBASIC3.06□□□□□ -1.92
VCANP13611 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.06□□□□□ -1.92
VCANP13611 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
VCANP13611 MIR592-201ENST00000384959 97 ntBASIC3.06□□□□□ -1.92
VCANP13611 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.06□□□□□ -1.92
VCANP13611 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.06□□□□□ -1.92
VCANP13611 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VCANP13611 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
VCANP13611 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
VCANP13611 RPL23AP82-202ENST00000427528 469 ntBASIC3.06□□□□□ -1.92
VCANP13611 AC087499.2-201ENST00000432861 149 ntBASIC3.06□□□□□ -1.92
VCANP13611 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.06□□□□□ -1.92
VCANP13611 AL513043.1-201ENST00000439124 535 ntBASIC3.06□□□□□ -1.92
VCANP13611 HMGB1P15-201ENST00000453854 435 ntBASIC3.06□□□□□ -1.92
VCANP13611 CENPBD1P1-201ENST00000464061 469 ntBASIC3.06□□□□□ -1.92
VCANP13611 PRELID3BP7-201ENST00000503606 469 ntBASIC3.06□□□□□ -1.92
VCANP13611 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.06□□□□□ -1.92
VCANP13611 SNORD39.4-201ENST00000620099 78 ntBASIC3.06□□□□□ -1.92
VCANP13611 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
VCANP13611 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
VCANP13611 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC3.05□□□□□ -1.92
VCANP13611 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VCANP13611 RNU6-859P-201ENST00000362728 107 ntBASIC3.05□□□□□ -1.92
VCANP13611 RPL21P75-201ENST00000396599 483 ntBASIC3.05□□□□□ -1.92
VCANP13611 RPL21P1-201ENST00000399532 476 ntBASIC3.05□□□□□ -1.92
VCANP13611 RPL21P28-201ENST00000401418 483 ntBASIC3.05□□□□□ -1.92
VCANP13611 AL592114.1-201ENST00000403842 483 ntBASIC3.05□□□□□ -1.92
VCANP13611 OR2AS1P-201ENST00000427827 319 ntBASIC3.05□□□□□ -1.92
VCANP13611 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.05□□□□□ -1.92
VCANP13611 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.05□□□□□ -1.92
VCANP13611 RPL21P16-201ENST00000495531 483 ntBASIC3.05□□□□□ -1.92
VCANP13611 AP000867.2-201ENST00000532468 320 ntBASIC3.05□□□□□ -1.92
VCANP13611 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC3.05□□□□□ -1.92
VCANP13611 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VCANP13611 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.05□□□□□ -1.92
VCANP13611 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
VCANP13611 RPL37P4-201ENST00000448908 268 ntBASIC3.05□□□□□ -1.92
VCANP13611 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.05□□□□□ -1.92
VCANP13611 METTL15P1-201ENST00000481421 1045 ntBASIC3.05□□□□□ -1.92
VCANP13611 RNU6-1053P-201ENST00000515930 101 ntBASIC3.05□□□□□ -1.92
VCANP13611 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.05□□□□□ -1.92
VCANP13611 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.05□□□□□ -1.92
VCANP13611 AC007318.2-201ENST00000620999 243 ntBASIC3.05□□□□□ -1.92
VCANP13611 AC006840.1-201ENST00000623069 542 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms