Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NANOGNBP1-201ENST00000448444 480 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 RPL7P24-201ENST00000493052 752 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
COL6A1P12109 RNU6-314P-201ENST00000516574 104 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 AC068831.4-201ENST00000556118 109 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC5.51□□□□□ -1.53
COL6A1P12109 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 EIF5A2P1-201ENST00000564027 460 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 MIR4528-201ENST00000577763 90 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.51□□□□□ -1.53
COL6A1P12109 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC5.51□□□□□ -1.53
COL6A1P12109 AC012065.4-201ENST00000602445 679 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AC007014.2-201ENST00000615581 479 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 MIR6133-201ENST00000617057 108 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 MIR6839-201ENST00000620425 113 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AL161637.1-201ENST00000622380 412 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 CR381653.2-201ENST00000624041 768 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.51□□□□□ -1.53
COL6A1P12109 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.51□□□□□ -1.53
COL6A1P12109 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 MTND4P29-201ENST00000503122 1372 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 AL592148.3-201ENST00000608771 2646 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.51□□□□□ -1.53
COL6A1P12109 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 AC009951.1-201ENST00000623674 2614 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A1P12109 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL6A1P12109 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL6A1P12109 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
COL6A1P12109 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A1P12109 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A1P12109 RPEP3-201ENST00000425462 676 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A1P12109 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AL009174.1-201ENST00000426577 416 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A1P12109 B3GNT2P1-201ENST00000434960 952 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 UBE2FP3-201ENST00000436366 524 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A1P12109 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A1P12109 UBE2V1P3-201ENST00000439651 417 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 RPS7P5-201ENST00000441482 581 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 SNRPEP8-201ENST00000442866 260 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 ARL2BPP10-201ENST00000446487 531 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 BX842559.2-201ENST00000451418 605 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC5.5□□□□□ -1.53
COL6A1P12109 RPL30P11-201ENST00000495304 339 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AL358832.1-201ENST00000497800 389 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.5□□□□□ -1.53
COL6A1P12109 IGHV3-32-201ENST00000519182 355 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AC008562.1-201ENST00000521763 330 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A1P12109 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A1P12109 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.5□□□□□ -1.53
COL6A1P12109 GTF2IP22-201ENST00000554443 182 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 BPTFP1-201ENST00000579209 492 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A1P12109 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.5□□□□□ -1.53
COL6A1P12109 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.5□□□□□ -1.53
COL6A1P12109 AC015871.2-201ENST00000603605 948 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 SEPT7P9-203ENST00000604116 343 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AP000860.1-201ENST00000605250 559 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.5□□□□□ -1.53
COL6A1P12109 AC023509.5-201ENST00000617434 807 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AC072046.2-201ENST00000618366 268 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AC099654.5-201ENST00000636479 350 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL6A1P12109 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.5□□□□□ -1.53
COL6A1P12109 AC011447.7-201ENST00000624228 1590 ntBASIC5.5□□□□□ -1.53
COL6A1P12109 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.5□□□□□ -1.53
COL6A1P12109 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL6A1P12109 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 AC108751.5-201ENST00000492880 1336 ntBASIC5.49□□□□□ -1.53
COL6A1P12109 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.49□□□□□ -1.53
COL6A1P12109 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL6A1P12109 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms