Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AP002833.3-201ENST00000625075 2265 ntBASIC6.89□□□□□ -1.31
VPS9D1Q9Y2B5 PAPPA-AS1-201ENST00000445861 2450 ntBASIC6.89□□□□□ -1.31
VPS9D1Q9Y2B5 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
VPS9D1Q9Y2B5 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
VPS9D1Q9Y2B5 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
VPS9D1Q9Y2B5 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.89□□□□□ -1.31
VPS9D1Q9Y2B5 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 Z75746.1-201ENST00000440243 2080 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 LINC02555-201ENST00000563933 1951 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP000560.1-201ENST00000624150 1937 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 OSBPL9P4-201ENST00000371707 1800 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 HSPA8P14-201ENST00000552265 1805 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC022819.1-201ENST00000563495 3910 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 RNU6-715P-201ENST00000365204 103 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 RNU6-658P-201ENST00000384606 106 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP003170.5-201ENST00000397185 335 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 RN7SKP148-201ENST00000410179 275 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 RPL12P10-201ENST00000413498 498 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC007365.2-201ENST00000428806 458 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 CBX1P4-201ENST00000439415 457 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC239809.1-201ENST00000450470 217 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 RPL23AP81-201ENST00000455252 467 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 TRBV26-201ENST00000456572 344 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP000926.1-201ENST00000479573 241 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 OR51K1P-201ENST00000510214 950 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 NDUFB4P9-201ENST00000511646 388 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 RNA5SP318-201ENST00000516352 92 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP003396.4-201ENST00000527574 265 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC093023.1-201ENST00000547375 507 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 SIGLEC31P-201ENST00000594237 551 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 AC010401.2-201ENST00000575137 4934 ntBASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
VPS9D1Q9Y2B5 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 GABPAP-201ENST00000419271 1356 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 RNA5SP65-201ENST00000363166 119 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 RNA5SP280-201ENST00000411230 115 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC016769.2-201ENST00000414815 475 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 GRPEL2P2-201ENST00000421856 670 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AL034379.1-201ENST00000423216 253 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 RPS26P11-201ENST00000463445 348 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 RPS26P6-201ENST00000475156 348 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 CEACAMP3-202ENST00000483806 638 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC140059.1-201ENST00000489238 361 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC106760.2-201ENST00000504159 619 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC008958.1-201ENST00000511047 682 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AP006587.5-201ENST00000532033 739 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 HMGB1P42-201ENST00000532126 553 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC136932.1-201ENST00000574771 208 ntBASIC6.87□□□□□ -1.31
VPS9D1Q9Y2B5 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms