Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AL034351.1-201ENST00000605288 668 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC021646.1-201ENST00000605469 484 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 TUG1_2.1-201ENST00000614234 87 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 uc_338.34-201ENST00000617467 174 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AL589994.2-201ENST00000621124 579 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC243312.2-201ENST00000623340 601 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC055839.1-201ENST00000634467 498 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AL133216.2-202ENST00000634512 349 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 BRAFP1-201ENST00000445336 2703 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC024587.1-201ENST00000505925 2157 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 DDX10P1-201ENST00000448545 1933 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 ASNSP1-201ENST00000518311 1939 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 Y_RNA.100-201ENST00000363141 102 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 RN7SKP250-201ENST00000363924 321 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 RNU6-960P-201ENST00000364056 120 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 RNU6-61P-201ENST00000365528 109 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 Y_RNA.384-201ENST00000383909 102 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 CYB5AP4-201ENST00000396692 399 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 ARL4AP5-201ENST00000404372 599 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MIR1302-11-201ENST00000408051 138 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MIR1302-9-201ENST00000408365 138 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MIR1302-10-201ENST00000408734 138 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC015977.1-201ENST00000418887 292 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AL137014.1-201ENST00000420490 1226 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC099677.1-201ENST00000420575 175 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC099782.1-201ENST00000425889 474 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MTCO2P12-201ENST00000427426 682 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC005534.2-201ENST00000431047 433 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC079804.1-201ENST00000461922 436 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AL117692.1-201ENST00000494283 713 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC108078.2-201ENST00000510750 236 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC026801.2-201ENST00000515352 425 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC068446.3-201ENST00000555285 382 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC026826.3-201ENST00000561747 158 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AF038458.1-201ENST00000588406 262 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC005034.5-201ENST00000604219 466 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AL162431.4-201ENST00000604674 411 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 AC008555.7-201ENST00000605008 583 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 MIR1302-2-201ENST00000607096 138 ntBASIC4.78□□□□□ -1.64
CCDC140Q96MF4 TEX41-293ENST00000630451 690 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC4.78□□□□□ -1.64
CCDC140Q96MF4 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC140Q96MF4 AL645937.1-201ENST00000641739 1652 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 API5P2-201ENST00000397055 1498 ntBASIC4.77□□□□□ -1.65
CCDC140Q96MF4 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 133 ms