Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
HPS3Q969F9 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HPS3Q969F9 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 AC021146.4-201ENST00000309229 279 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC011155.1-201ENST00000316512 456 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 RPL21P132-201ENST00000331267 462 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 Y_RNA.77-201ENST00000362962 107 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 RNA5SP87-201ENST00000384155 118 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HPS3Q969F9 RPS3AP26-201ENST00000398259 784 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 RN7SKP106-201ENST00000410832 272 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC069218.2-201ENST00000411665 344 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 FAR2P2-201ENST00000413041 594 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.11□□□□□ -1.59
HPS3Q969F9 AC016907.1-201ENST00000419483 435 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 FAR2P4-202ENST00000425399 584 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 BMS1P19-201ENST00000433925 393 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC016831.4-201ENST00000438302 307 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.11□□□□□ -1.59
HPS3Q969F9 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 RPL39P6-201ENST00000448289 150 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 CEACAMP6-201ENST00000452007 574 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.11□□□□□ -1.59
HPS3Q969F9 TRBV26-201ENST00000456572 344 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 MTND4LP3-201ENST00000468320 276 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC025164.1-201ENST00000496249 478 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC114981.1-201ENST00000503897 678 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 MTATP6P22-201ENST00000507369 598 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 LTV1P1-201ENST00000510683 1237 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.11□□□□□ -1.59
HPS3Q969F9 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.11□□□□□ -1.59
HPS3Q969F9 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.11□□□□□ -1.59
HPS3Q969F9 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.11□□□□□ -1.59
HPS3Q969F9 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5.11□□□□□ -1.59
HPS3Q969F9 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC5.11□□□□□ -1.59
HPS3Q969F9 AC124068.1-201ENST00000563131 678 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 MIR4330-201ENST00000579077 105 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AP005136.1-201ENST00000579765 429 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5.11□□□□□ -1.59
HPS3Q969F9 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.11□□□□□ -1.59
HPS3Q969F9 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.11□□□□□ -1.59
HPS3Q969F9 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.11□□□□□ -1.59
HPS3Q969F9 SNORD91B-202ENST00000608459 222 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC073114.1-201ENST00000612027 490 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AC091965.5-201ENST00000624785 342 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.11□□□□□ -1.59
HPS3Q969F9 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
HPS3Q969F9 ERCC6-202ENST00000374127 1782 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HPS3Q969F9 MAPK10-304ENST00000641341 3984 ntBASIC5.11□□□□□ -1.59
HPS3Q969F9 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
HPS3Q969F9 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HPS3Q969F9 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.1□□□□□ -1.59
HPS3Q969F9 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HPS3Q969F9 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 Y_RNA.302-201ENST00000364997 102 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.1□□□□□ -1.59
HPS3Q969F9 AC019155.1-201ENST00000382242 574 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HPS3Q969F9 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 SSXP10-201ENST00000402595 565 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.1□□□□□ -1.59
HPS3Q969F9 RN7SKP167-201ENST00000411047 285 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.1□□□□□ -1.59
HPS3Q969F9 Z99497.1-201ENST00000421282 135 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.1□□□□□ -1.59
HPS3Q969F9 AL953862.1-201ENST00000423016 168 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 RPL30P3-201ENST00000424262 333 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
HPS3Q969F9 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.1□□□□□ -1.59
HPS3Q969F9 MTND1P30-201ENST00000441241 901 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HPS3Q969F9 MTND2P28-201ENST00000457540 1044 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 AC011005.3-201ENST00000491624 395 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.1□□□□□ -1.59
HPS3Q969F9 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.1□□□□□ -1.59
HPS3Q969F9 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.1□□□□□ -1.59
HPS3Q969F9 AC007016.1-201ENST00000512110 244 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 AC104057.1-201ENST00000515547 497 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 RN7SKP82-201ENST00000516786 223 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 AC106038.2-201ENST00000520706 568 ntBASIC5.1□□□□□ -1.59
HPS3Q969F9 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.1□□□□□ -1.59
HPS3Q969F9 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC5.1□□□□□ -1.59
HPS3Q969F9 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.1□□□□□ -1.59
HPS3Q969F9 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.1□□□□□ -1.59
HPS3Q969F9 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms