Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL138878.1-201ENST00000405131 347 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 HMGB1P3-201ENST00000502802 616 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 AC015911.5-201ENST00000587076 451 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 AL008729.2-201ENST00000606393 473 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 AC068722.2-201ENST00000618734 544 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 AC007390.2-201ENST00000606229 3803 ntBASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC88AQ3V6T2 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 OR52B1P-201ENST00000316506 909 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 MIR708-201ENST00000390708 88 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 RPL5P18-201ENST00000406671 891 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 RPL12P26-201ENST00000452430 487 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AL109933.2-201ENST00000452651 260 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 RNU6-1334P-201ENST00000516032 105 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC005242.1-201ENST00000585658 438 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AL390838.2-201ENST00000602394 274 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC139713.2-210ENST00000641741 992 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 U3.12-201ENST00000364498 214 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC126124.2-201ENST00000413542 321 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC019097.1-201ENST00000424783 735 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 MRPS31P2-201ENST00000451581 518 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AL512310.1-201ENST00000548639 172 ntBASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.92□□□□□ -1.78
CCDC88AQ3V6T2 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 RNU6-283P-201ENST00000364788 107 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AC093755.1-201ENST00000512950 1023 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 RNU1-143P-201ENST00000516296 146 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AL358913.1-201ENST00000554342 121 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 U1.23-201ENST00000610293 146 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 uc_338.25-201ENST00000613756 156 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 RNU1-68P-201ENST00000615382 146 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 AC131238.1-201ENST00000617135 328 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 U1.39-201ENST00000621562 146 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC88AQ3V6T2 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 ETF1P3-201ENST00000430422 1160 ntBASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 AL365396.1-201ENST00000430854 671 ntBASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 AL135938.1-201ENST00000443141 297 ntBASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 Z99127.3-201ENST00000448158 395 ntBASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 AC021146.1-201ENST00000511202 716 ntBASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 AP000859.1-201ENST00000525536 307 ntBASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 AC010149.2-201ENST00000637608 315 ntBASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC88AQ3V6T2 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AP002088.1-201ENST00000382740 395 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 RPL23AP48-201ENST00000406913 488 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AL592148.1-201ENST00000413568 445 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AC003685.2-201ENST00000422795 395 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AL513174.1-201ENST00000423182 629 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AC008264.1-201ENST00000447612 367 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 MTCO3P20-201ENST00000454926 688 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AC010306.1-201ENST00000523223 1117 ntBASIC3.9□□□□□ -1.79
CCDC88AQ3V6T2 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms